Variant report
| Variant | rs11120359 |
|---|---|
| Chromosome Location | chr1:214764594-214764595 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000117724 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10864112 | 0.95[ASN][1000 genomes] |
| rs11120356 | 0.92[ASN][1000 genomes] |
| rs11120357 | 0.95[ASN][1000 genomes] |
| rs11120358 | 0.95[ASN][1000 genomes] |
| rs11120360 | 0.95[ASN][1000 genomes] |
| rs1877148 | 0.95[ASN][1000 genomes] |
| rs1877149 | 0.95[ASN][1000 genomes] |
| rs1877150 | 0.95[ASN][1000 genomes] |
| rs2011467 | 0.84[ASN][1000 genomes] |
| rs2666838 | 0.82[ASN][1000 genomes] |
| rs2666843 | 0.95[ASN][1000 genomes] |
| rs2666844 | 0.95[ASN][1000 genomes] |
| rs2666845 | 0.95[ASN][1000 genomes] |
| rs2666846 | 0.95[ASN][1000 genomes] |
| rs2666847 | 0.93[ASN][1000 genomes] |
| rs2666848 | 0.95[ASN][1000 genomes] |
| rs2666849 | 0.95[ASN][1000 genomes] |
| rs2666850 | 0.95[ASN][1000 genomes] |
| rs2666852 | 0.95[ASN][1000 genomes] |
| rs2807647 | 0.95[ASN][1000 genomes] |
| rs2807648 | 0.95[ASN][1000 genomes] |
| rs2807649 | 0.95[ASN][1000 genomes] |
| rs2807652 | 0.95[ASN][1000 genomes] |
| rs2807653 | 0.95[ASN][1000 genomes] |
| rs2807654 | 0.95[ASN][1000 genomes] |
| rs2807655 | 0.95[ASN][1000 genomes] |
| rs34157392 | 0.95[ASN][1000 genomes] |
| rs4472736 | 0.84[ASN][1000 genomes] |
| rs61820734 | 0.95[ASN][1000 genomes] |
| rs6540850 | 0.95[ASN][1000 genomes] |
| rs6540851 | 0.83[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6540852 | 0.95[ASN][1000 genomes] |
| rs7535358 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs907217 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004475 | chr1:214763778-215013375 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
