Variant report

Variant	rs7535358
Chromosome Location	chr1:214764710-214764711
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214761129..214763798-chr1:214764327..214767085,2	K562	blood:
2	chr1:214762888..214767238-chr1:214774189..214777620,3	K562	blood:

Variant related genes	Relation type
ENSG00000117724	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10864112	0.93[ASN][1000 genomes]
rs11120356	0.90[ASN][1000 genomes]
rs11120357	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11120358	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11120359	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11120360	0.93[ASN][1000 genomes]
rs1877148	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1877149	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1877150	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2011467	0.82[ASN][1000 genomes]
rs2666838	0.81[ASN][1000 genomes]
rs2666843	0.93[ASN][1000 genomes]
rs2666844	0.93[ASN][1000 genomes]
rs2666845	0.93[ASN][1000 genomes]
rs2666846	0.93[ASN][1000 genomes]
rs2666847	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2666848	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2666849	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2666850	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2666852	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2807647	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2807648	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2807649	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2807652	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2807653	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2807654	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2807655	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34157392	0.93[ASN][1000 genomes]
rs4370741	0.81[ASN][1000 genomes]
rs4472736	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs61820734	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6540850	0.93[ASN][1000 genomes]
rs6540851	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6540852	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs907217	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004475	chr1:214763778-215013375	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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