Variant report

Variant	rs11120355
Chromosome Location	chr1:214743046-214743047
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214724523..214727370-chr1:214742799..214745367,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152104	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10494984	1.00[CEU][hapmap]
rs10864111	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11120354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120356	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs12058704	0.92[MEX][hapmap]
rs12097854	0.92[MEX][hapmap]
rs12404854	0.81[EUR][1000 genomes]
rs12405890	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12408289	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12409422	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12410075	0.84[EUR][1000 genomes]
rs12564450	0.88[GIH][hapmap]
rs17023284	0.84[EUR][1000 genomes]
rs17023338	0.92[MEX][hapmap]
rs17023380	0.92[MEX][hapmap]
rs17023384	0.92[MEX][hapmap]
rs2011467	0.84[ASN][1000 genomes]
rs2292377	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2292378	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2292379	0.84[EUR][1000 genomes]
rs2666838	0.83[ASN][1000 genomes]
rs2666844	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs2666848	0.82[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap]
rs2807652	0.82[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap]
rs2807653	0.82[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap]
rs2807654	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs2807655	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs34157392	0.89[AFR][1000 genomes]
rs3748695	0.92[MEX][hapmap]
rs3748698	0.92[MEX][hapmap]
rs3790648	0.92[MEX][hapmap]
rs3790649	0.92[MEX][hapmap]
rs3795514	1.00[CEU][hapmap];0.92[MEX][hapmap]
rs3795516	0.92[MEX][hapmap]
rs41303281	0.84[EUR][1000 genomes]
rs4472736	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs59918378	0.84[EUR][1000 genomes]
rs6540851	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs6540852	0.82[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap]
rs6669573	0.84[EUR][1000 genomes]
rs7522082	0.93[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs7523691	0.93[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.87[ASN][1000 genomes]
rs907217	0.84[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214737200-214744800	Enhancers	NHDF-Ad	bronchial
2	chr1:214738400-214744400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:214738600-214745600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:214738800-214744400	Enhancers	HSMM	muscle
5	chr1:214739000-214744800	Enhancers	NHLF	lung
6	chr1:214739200-214743400	Enhancers	Osteobl	bone
7	chr1:214739200-214744600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:214739200-214748600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:214739400-214745200	Weak transcription	Fetal Brain Male	brain
10	chr1:214739400-214746800	Enhancers	NHEK	skin
11	chr1:214739600-214744400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:214739600-214746800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:214739800-214745000	Enhancers	HUVEC	blood vessel
14	chr1:214739800-214746600	Enhancers	HMEC	breast
15	chr1:214740000-214744600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:214740200-214746600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr1:214740400-214744800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:214740600-214744800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:214740800-214747000	Weak transcription	HSMMtube	muscle
20	chr1:214741200-214743400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:214741200-214744600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:214742000-214747000	Weak transcription	Stomach Mucosa	stomach
23	chr1:214742000-214747000	Weak transcription	Hela-S3	cervix
24	chr1:214742800-214744600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr1:214742800-214745000	Weak transcription	Ovary	ovary
26	chr1:214742800-214745600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:214743000-214743200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:214743000-214743800	Enhancers	A549	lung
29	chr1:214743000-214743800	Flanking Active TSS	NH-A	brain

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