The 2.0 version of rSNPBase

Variant report

Variant rs41303281
Chromosome Location chr1:214788427-214788428
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214777600-214800400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:214777600-214810800 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:214777600-214838600 Weak transcription Esophagus oesophagus
4 chr1:214777800-214838400 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr1:214778000-214839200 Weak transcription Rectal Mucosa Donor 29 rectum
6 chr1:214778200-214791200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr1:214778200-214791200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
8 chr1:214778200-214793000 Weak transcription HSMM muscle
9 chr1:214778200-214793600 Weak transcription Duodenum Mucosa Duodenum
10 chr1:214778200-214793800 Weak transcription Fetal Adrenal Gland Adrenal Gland
11 chr1:214778200-214803600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr1:214778400-214794200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr1:214778600-214791200 Weak transcription NHEK skin
14 chr1:214778800-214788800 Weak transcription HMEC breast
15 chr1:214778800-214794000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
16 chr1:214781200-214818000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr1:214781400-214790600 Weak transcription Fetal Muscle Trunk muscle
18 chr1:214781600-214791400 Weak transcription iPS-15b Cell Line embryonic stem cell
19 chr1:214781800-214792800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr1:214781800-214794000 Weak transcription Fetal Stomach stomach
21 chr1:214781800-214795800 Weak transcription Fetal Intestine Small intestine
22 chr1:214782000-214803800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
23 chr1:214782800-214792800 Weak transcription Thymus Thymus
24 chr1:214782800-214794000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr1:214783000-214788600 Weak transcription Primary neutrophils fromperipheralblood blood
26 chr1:214783000-214788800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr1:214783200-214788800 Weak transcription GM12878-XiMat blood
28 chr1:214783200-214790600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr1:214783200-214790600 Weak transcription Fetal Muscle Leg muscle
30 chr1:214783200-214794000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:214783200-214817800 Weak transcription ES-WA7 Cell Line embryonic stem cell
32 chr1:214783400-214789000 Weak transcription Fetal Lung lung
33 chr1:214783400-214791200 Weak transcription H9 Cell Line embryonic stem cell
34 chr1:214783400-214793000 Weak transcription ES-I3 Cell Line embryonic stem cell
35 chr1:214783400-214838800 Weak transcription Fetal Kidney kidney
36 chr1:214783600-214788800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr1:214783600-214790400 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr1:214784400-214790400 Weak transcription Primary T regulatory cells fromperipheralblood blood
39 chr1:214784600-214834000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr1:214784800-214791000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr1:214784800-214803600 Weak transcription Brain Germinal Matrix brain
42 chr1:214784800-214807400 Weak transcription Fetal Brain Female brain
43 chr1:214785600-214819400 Strong transcription K562 blood
44 chr1:214785600-214843800 Strong transcription Fetal Thymus thymus
45 chr1:214785800-214800600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr1:214786000-214794600 Weak transcription Primary T cells from cord blood blood
47 chr1:214786200-214843000 Strong transcription HUES64 Cell Line embryonic stem cell
48 chr1:214786600-214789800 Enhancers Osteobl bone
49 chr1:214786600-214797200 Strong transcription H1 Cell Line embryonic stem cell
50 chr1:214786600-214800200 Strong transcription HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015