Variant report
| Variant | rs2666840 |
|---|---|
| Chromosome Location | chr1:214769365-214769366 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000117724 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs12081395 | 0.81[ASN][1000 genomes] |
| rs12404854 | 0.84[ASN][1000 genomes] |
| rs12405890 | 0.84[ASN][1000 genomes] |
| rs12405995 | 0.84[ASN][1000 genomes] |
| rs12408129 | 0.81[ASN][1000 genomes] |
| rs12410075 | 0.84[ASN][1000 genomes] |
| rs17023274 | 0.84[ASN][1000 genomes] |
| rs17023275 | 0.84[ASN][1000 genomes] |
| rs17023278 | 0.81[ASN][1000 genomes] |
| rs17023282 | 0.81[ASN][1000 genomes] |
| rs2292377 | 0.81[ASN][1000 genomes] |
| rs2292378 | 0.81[ASN][1000 genomes] |
| rs41303281 | 0.84[ASN][1000 genomes] |
| rs60944459 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004475 | chr1:214763778-215013375 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
