Variant report
Variant | rs2666840 |
---|---|
Chromosome Location | chr1:214769365-214769366 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000117724 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs12081395 | 0.81[ASN][1000 genomes] |
rs12404854 | 0.84[ASN][1000 genomes] |
rs12405890 | 0.84[ASN][1000 genomes] |
rs12405995 | 0.84[ASN][1000 genomes] |
rs12408129 | 0.81[ASN][1000 genomes] |
rs12410075 | 0.84[ASN][1000 genomes] |
rs17023274 | 0.84[ASN][1000 genomes] |
rs17023275 | 0.84[ASN][1000 genomes] |
rs17023278 | 0.81[ASN][1000 genomes] |
rs17023282 | 0.81[ASN][1000 genomes] |
rs2292377 | 0.81[ASN][1000 genomes] |
rs2292378 | 0.81[ASN][1000 genomes] |
rs41303281 | 0.84[ASN][1000 genomes] |
rs60944459 | 0.84[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1004475 | chr1:214763778-215013375 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |