Variant report

Variant	rs954414
Chromosome Location	chr1:214746009-214746010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214738422..214740477-chr1:214743823..214746810,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10494981	1.00[CHB][hapmap]
rs17734395	1.00[CHB][hapmap]
rs17734456	1.00[CHB][hapmap]
rs17734758	1.00[CHB][hapmap]
rs17734879	1.00[CHB][hapmap]
rs17734993	1.00[CHB][hapmap]
rs17735632	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17735873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17735908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791024	1.00[CHB][hapmap]
rs17792227	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17792294	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17792674	1.00[CEU][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs2362215	1.00[CEU][hapmap]
rs35329321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4077549	1.00[CHB][hapmap]
rs59110162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60323172	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60569881	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6540846	1.00[CHB][hapmap]
rs6540847	1.00[CHB][hapmap]
rs6675792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6701105	1.00[CHB][hapmap]
rs6701315	1.00[CHB][hapmap]
rs73079780	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7529892	0.85[YRI][hapmap]
rs7550419	1.00[CHB][hapmap]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214739200-214748600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:214739400-214746800	Enhancers	NHEK	skin
3	chr1:214739600-214746800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:214739800-214746600	Enhancers	HMEC	breast
5	chr1:214740200-214746600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:214740800-214747000	Weak transcription	HSMMtube	muscle
7	chr1:214742000-214747000	Weak transcription	Stomach Mucosa	stomach
8	chr1:214742000-214747000	Weak transcription	Hela-S3	cervix
9	chr1:214743400-214746600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:214744400-214746400	Weak transcription	HSMM	muscle
11	chr1:214744400-214747200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:214744600-214746200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:214744600-214746200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:214744600-214746600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:214744600-214747000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:214744800-214746600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:214744800-214746800	Weak transcription	NH-A	brain
18	chr1:214745200-214746600	Enhancers	Fetal Brain Male	brain
19	chr1:214745400-214747000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:214745400-214747200	Enhancers	HUVEC	blood vessel
21	chr1:214745600-214746200	Enhancers	Placenta	Placenta
22	chr1:214745600-214746400	Enhancers	Esophagus	oesophagus
23	chr1:214745600-214747000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:214746000-214746400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:214746000-214746800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:214746000-214746800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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