Variant report

Variant	rs17735873
Chromosome Location	chr1:214747718-214747719
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10494981	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[MKK][hapmap];0.85[TSI][hapmap]
rs17734395	1.00[CHB][hapmap]
rs17734456	1.00[CHB][hapmap]
rs17734758	1.00[CHB][hapmap]
rs17734879	1.00[CHB][hapmap]
rs17734993	1.00[CHB][hapmap]
rs17735632	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17735908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791024	1.00[CHB][hapmap]
rs17792227	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17792294	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17792674	1.00[CEU][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs2362215	1.00[CEU][hapmap];0.90[MKK][hapmap]
rs35329321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4077549	1.00[CHB][hapmap]
rs59110162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60323172	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60569881	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6540846	1.00[CHB][hapmap];0.85[TSI][hapmap]
rs6540847	1.00[CHB][hapmap]
rs6675792	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6701105	1.00[CHB][hapmap]
rs6701315	1.00[CHB][hapmap]
rs73079780	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7529892	0.85[YRI][hapmap]
rs7550419	1.00[CHB][hapmap]
rs954414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214739200-214748600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:214746200-214748600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:214746600-214747800	Enhancers	Colon Smooth Muscle	Colon
4	chr1:214746600-214748200	Flanking Active TSS	HMEC	breast
5	chr1:214746600-214748400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr1:214746800-214747800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr1:214746800-214748000	Flanking Active TSS	NHEK	skin
8	chr1:214747000-214747800	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr1:214747000-214747800	Enhancers	Rectal Smooth Muscle	rectum
10	chr1:214747000-214747800	Enhancers	Stomach Mucosa	stomach
11	chr1:214747000-214747800	Enhancers	HSMMtube	muscle
12	chr1:214747000-214748000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:214747000-214748800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:214747000-214748800	Enhancers	Hela-S3	cervix
15	chr1:214747200-214748000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr1:214747200-214748600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:214747400-214748400	Weak transcription	Placenta	Placenta
18	chr1:214747600-214748000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:214747600-214748000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:214747600-214748400	Weak transcription	HSMM	muscle

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