Variant report

Variant	rs41307662
Chromosome Location	chr1:214706608-214706609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214697599..214700656-chr1:214706044..214709050,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10494981	1.00[ASN][1000 genomes]
rs11588026	0.83[ASN][1000 genomes]
rs17734395	1.00[ASN][1000 genomes]
rs17734456	1.00[ASN][1000 genomes]
rs17734758	1.00[ASN][1000 genomes]
rs17734879	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17734993	1.00[ASN][1000 genomes]
rs17791024	1.00[ASN][1000 genomes]
rs4074425	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4077549	1.00[ASN][1000 genomes]
rs4448491	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4529685	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4535975	1.00[ASN][1000 genomes]
rs6540846	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540847	1.00[ASN][1000 genomes]
rs6701105	1.00[ASN][1000 genomes]
rs6701315	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67542303	1.00[ASN][1000 genomes]
rs72759634	1.00[ASN][1000 genomes]
rs7550419	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv945285	chr1:214705327-214707354	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214688400-214710600	Weak transcription	Spleen	Spleen
2	chr1:214692400-214710600	Weak transcription	HUVEC	blood vessel
3	chr1:214698800-214710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr1:214699200-214711400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:214699200-214711600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:214699200-214722000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:214699200-214722400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:214699800-214715200	Weak transcription	Stomach Mucosa	stomach
9	chr1:214700800-214711400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr1:214701200-214710400	Weak transcription	Adipose Nuclei	Adipose
11	chr1:214701200-214710800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr1:214701200-214710800	Weak transcription	NH-A	brain
13	chr1:214701200-214719000	Weak transcription	Hela-S3	cervix
14	chr1:214701400-214710600	Weak transcription	NHDF-Ad	bronchial
15	chr1:214701600-214710400	Weak transcription	A549	lung
16	chr1:214702200-214706800	Weak transcription	Fetal Intestine Large	intestine
17	chr1:214702800-214718800	Weak transcription	Aorta	Aorta
18	chr1:214703000-214710600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:214703000-214711600	Weak transcription	Psoas Muscle	Psoas
20	chr1:214703600-214710400	Weak transcription	Small Intestine	intestine
21	chr1:214703800-214711800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:214704000-214707000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:214704200-214711600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:214704600-214706800	Strong transcription	HSMM	muscle
25	chr1:214704800-214706800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:214704800-214706800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:214704800-214707000	Strong transcription	HMEC	breast
28	chr1:214704800-214707000	Strong transcription	NHEK	skin
29	chr1:214705000-214706800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:214705000-214710600	Weak transcription	Fetal Lung	lung
31	chr1:214705200-214707000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr1:214705200-214710600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr1:214705400-214706800	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr1:214705400-214706800	Strong transcription	Fetal Stomach	stomach
35	chr1:214705400-214706800	Strong transcription	NHLF	lung
36	chr1:214705400-214706800	Strong transcription	Osteobl	bone
37	chr1:214705400-214707000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr1:214705600-214706800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr1:214705600-214706800	Strong transcription	Pancreas	Pancrea
40	chr1:214705600-214707000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr1:214705600-214710600	Weak transcription	Colon Smooth Muscle	Colon
42	chr1:214705600-214713000	Weak transcription	Fetal Kidney	kidney
43	chr1:214705800-214706800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr1:214706000-214706800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:214706000-214706800	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr1:214706000-214706800	Strong transcription	Stomach Smooth Muscle	stomach
47	chr1:214706200-214706800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr1:214706200-214709600	Weak transcription	Placenta	Placenta
49	chr1:214706400-214706800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr1:214706400-214706800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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