Variant report

Variant	rs17023246
Chromosome Location	chr4:96134022-96134023
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11941383	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12108651	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12502686	0.88[ASN][1000 genomes]
rs17023352	1.00[JPT][hapmap]
rs17415818	1.00[JPT][hapmap]
rs2001246	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs28660566	1.00[ASN][1000 genomes]
rs3733214	1.00[JPT][hapmap]
rs59169589	0.88[ASN][1000 genomes]
rs7674595	1.00[JPT][hapmap]
rs7682415	0.88[ASN][1000 genomes]
rs9307157	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv879623	chr4:96123466-96168719	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
2	chr4:96124200-96135400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:96124200-96135400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:96126000-96134600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:96126000-96134600	Weak transcription	Fetal Lung	lung
6	chr4:96126000-96137000	Weak transcription	Ovary	ovary
7	chr4:96131400-96134400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:96131600-96134400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:96133400-96134200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:96133400-96134200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:96133400-96134200	Enhancers	Brain Cingulate Gyrus	brain
12	chr4:96133400-96134200	Enhancers	K562	blood
13	chr4:96133400-96134400	Enhancers	Brain Germinal Matrix	brain
14	chr4:96133400-96135800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr4:96133600-96134200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr4:96133600-96134200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr4:96133600-96134400	Enhancers	Brain Anterior Caudate	brain
18	chr4:96133600-96134800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:96133600-96135200	Enhancers	Stomach Mucosa	stomach
20	chr4:96133800-96134200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:96133800-96134600	Enhancers	Brain Angular Gyrus	brain
22	chr4:96133800-96134600	Strong transcription	Fetal Stomach	stomach
23	chr4:96133800-96134800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:96133800-96134800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr4:96133800-96134800	Enhancers	Gastric	stomach
26	chr4:96133800-96134800	Enhancers	Pancreas	Pancrea
27	chr4:96133800-96134800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr4:96133800-96135600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:96133800-96136200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:96133800-96136800	Enhancers	Brain Substantia Nigra	brain
31	chr4:96134000-96134200	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr4:96134000-96134400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr4:96134000-96134600	Enhancers	Fetal Brain Female	brain
34	chr4:96134000-96134800	Strong transcription	Aorta	Aorta
35	chr4:96134000-96135000	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr4:96134000-96135000	Enhancers	Fetal Heart	heart
37	chr4:96134000-96135200	Enhancers	Cortex derived primary cultured neurospheres	brain

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