Variant report

Variant	rs59169589
Chromosome Location	chr4:96116166-96116167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96110103..96113264-chr4:96113743..96117396,3	K562	blood:
2	chr4:96103400..96106252-chr4:96114809..96117645,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12502686	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505161	0.83[AFR][1000 genomes]
rs12510363	0.86[AFR][1000 genomes]
rs17023246	0.88[ASN][1000 genomes]
rs17415720	0.82[ASN][1000 genomes]
rs17415818	0.88[ASN][1000 genomes]
rs28660566	0.88[ASN][1000 genomes]
rs7682415	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs59169589	TAF11	trans	lymphoblastoid	RTeQTL

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96098000-96127000	Weak transcription	Right Atrium	heart
2	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
3	chr4:96103600-96123000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:96105800-96123200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:96110600-96133800	Weak transcription	Gastric	stomach
6	chr4:96110600-96134000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:96111600-96116200	Enhancers	Brain Substantia Nigra	brain
8	chr4:96111600-96116800	Enhancers	Brain Hippocampus Middle	brain
9	chr4:96112600-96125600	Weak transcription	Ovary	ovary
10	chr4:96112600-96127200	Weak transcription	Fetal Intestine Small	intestine
11	chr4:96112800-96122200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:96112800-96125400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr4:96113800-96116400	Enhancers	Primary T cells from cord blood	blood
14	chr4:96113800-96116400	Enhancers	Fetal Thymus	thymus
15	chr4:96114000-96116400	Weak transcription	Fetal Lung	lung
16	chr4:96114000-96116800	Enhancers	Fetal Heart	heart
17	chr4:96114200-96117000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:96114400-96116800	Strong transcription	Fetal Stomach	stomach
19	chr4:96114600-96116400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr4:96115200-96116800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr4:96115400-96116400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:96115400-96116400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr4:96115400-96134000	Weak transcription	Aorta	Aorta
24	chr4:96115800-96116200	Weak transcription	Brain Anterior Caudate	brain
25	chr4:96115800-96116600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr4:96115800-96116800	Genic enhancers	Brain Angular Gyrus	brain
27	chr4:96115800-96122000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:96115800-96132800	Weak transcription	Right Ventricle	heart
29	chr4:96116000-96121400	Weak transcription	Brain Cingulate Gyrus	brain

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