Variant report

Variant	rs17023326
Chromosome Location	chr2:100589979-100589980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NMS-4	chr2:100589922-100590219	NONHSAT072765
2	lnc-NMS-4	chr2:100588385-100590219	l_1895_chr2:100586533-100592424_testes

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17023518	1.00[AMR][1000 genomes]
rs4578903	1.00[AMR][1000 genomes]
rs58928934	1.00[AMR][1000 genomes]
rs61365481	1.00[AMR][1000 genomes]
rs6752954	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs6760359	1.00[AMR][1000 genomes]
rs7425800	1.00[AMR][1000 genomes]
rs7560187	1.00[AMR][1000 genomes]
rs7570214	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1003114	chr2:100480432-100601586	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100550800-100618200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:100563200-100625400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr2:100564800-100617000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr2:100570600-100598400	Weak transcription	Dnd41	blood
5	chr2:100573800-100599600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr2:100574400-100591000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:100577200-100590800	Weak transcription	Fetal Kidney	kidney
8	chr2:100577400-100618200	Weak transcription	Aorta	Aorta
9	chr2:100577800-100603400	Weak transcription	Colon Smooth Muscle	Colon
10	chr2:100577800-100607400	Weak transcription	Thymus	Thymus
11	chr2:100577800-100623000	Weak transcription	Adipose Nuclei	Adipose
12	chr2:100577800-100623000	Weak transcription	Brain Angular Gyrus	brain
13	chr2:100578000-100616200	Weak transcription	Fetal Thymus	thymus
14	chr2:100578400-100591000	Weak transcription	Fetal Brain Male	brain
15	chr2:100582400-100608000	Weak transcription	Fetal Stomach	stomach
16	chr2:100583200-100608000	Strong transcription	Primary B cells from peripheral blood	blood
17	chr2:100585800-100594000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:100586000-100598200	Weak transcription	Primary T cells from cord blood	blood
19	chr2:100586800-100592200	Strong transcription	Primary B cells from cord blood	blood
20	chr2:100587200-100591200	Weak transcription	NHLF	lung
21	chr2:100587400-100591000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr2:100587400-100599600	Weak transcription	Ovary	ovary
23	chr2:100587400-100601200	Weak transcription	Left Ventricle	heart
24	chr2:100587400-100623000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr2:100587400-100623000	Weak transcription	Spleen	Spleen
26	chr2:100587800-100591200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:100588200-100590800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:100588600-100590800	Weak transcription	NH-A	brain
29	chr2:100589000-100591600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:100589200-100590800	Weak transcription	Osteobl	bone
31	chr2:100589200-100594000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr2:100589400-100590200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr2:100589400-100591000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:100589400-100598000	Weak transcription	Fetal Lung	lung
35	chr2:100589600-100590400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr2:100589600-100591400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr2:100589800-100590800	Weak transcription	Fetal Brain Female	brain
38	chr2:100589800-100590800	Weak transcription	Gastric	stomach

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