Variant report

Variant	rs7425800
Chromosome Location	chr2:100567352-100567353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17023326	1.00[AMR][1000 genomes]
rs17023518	1.00[AMR][1000 genomes]
rs4578903	1.00[AMR][1000 genomes]
rs58928934	1.00[AMR][1000 genomes]
rs61365481	1.00[AMR][1000 genomes]
rs6752954	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6760359	1.00[AMR][1000 genomes]
rs7560187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7570214	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1003114	chr2:100480432-100601586	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100540200-100572600	Weak transcription	Adipose Nuclei	Adipose
2	chr2:100541800-100575000	Weak transcription	Brain Germinal Matrix	brain
3	chr2:100545600-100572600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:100547600-100569200	Weak transcription	Fetal Stomach	stomach
5	chr2:100547600-100577200	Weak transcription	Thymus	Thymus
6	chr2:100550800-100577000	Weak transcription	Spleen	Spleen
7	chr2:100550800-100618200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:100553400-100569800	Weak transcription	Lung	lung
9	chr2:100553600-100573200	Strong transcription	Primary B cells from peripheral blood	blood
10	chr2:100553600-100573400	Weak transcription	Fetal Brain Female	brain
11	chr2:100558600-100568800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:100558800-100569200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:100558800-100576200	Weak transcription	Fetal Lung	lung
14	chr2:100559800-100577000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:100560600-100577000	Weak transcription	Right Atrium	heart
16	chr2:100561200-100572200	Weak transcription	Gastric	stomach
17	chr2:100563200-100625400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr2:100564200-100570800	Strong transcription	Primary B cells from cord blood	blood
19	chr2:100564800-100570200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:100564800-100577000	Weak transcription	Ovary	ovary
21	chr2:100564800-100617000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr2:100565000-100569200	Weak transcription	Dnd41	blood
23	chr2:100565200-100568600	Weak transcription	Primary T cells from cord blood	blood
24	chr2:100566400-100568800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:100567200-100571000	Weak transcription	Rectal Smooth Muscle	rectum

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