Variant report

Variant	rs17023665
Chromosome Location	chr3:86972815-86972816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17023658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1898271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2232714	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62257279	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62257280	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62257281	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62257283	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62257314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62257339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62257341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62257346	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62258571	1.00[AFR][1000 genomes]
rs62258639	1.00[AFR][1000 genomes]
rs62258642	1.00[AFR][1000 genomes]
rs62258657	1.00[AFR][1000 genomes]
rs62258659	1.00[AFR][1000 genomes]
rs62259360	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs62259363	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534036	chr3:86967129-87283600	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86970600-86973600	Enhancers	Osteobl	bone
2	chr3:86970800-86973400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:86970800-86973400	Enhancers	HMEC	breast
4	chr3:86970800-86973600	Enhancers	HSMMtube	muscle
5	chr3:86970800-86973600	Enhancers	NHLF	lung
6	chr3:86970800-86973800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:86971000-86973400	Enhancers	NHEK	skin
8	chr3:86971200-86973600	Enhancers	Hela-S3	cervix
9	chr3:86971400-86973800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:86971600-86973400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:86971600-86973800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr3:86971600-86974200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:86972000-86973200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:86972400-86973800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:86972600-86973000	Active TSS	HSMM	muscle
16	chr3:86972600-86973600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:86972600-86973800	Enhancers	NHDF-Ad	bronchial
18	chr3:86972600-86974600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr3:86972600-86986400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:86972800-86973000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:86972800-86973200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:86972800-86973200	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:86972800-86973400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:86972800-86978200	Weak transcription	Placenta	Placenta

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