Variant report

Variant	rs17023658
Chromosome Location	chr3:86965478-86965479
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17023665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023716	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17794306	1.00[CEU][hapmap]
rs1898271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2232714	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62257279	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62257280	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62257281	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62257283	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62257314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62257339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62257341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62257346	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62259360	0.82[AMR][1000 genomes]
rs62259363	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86964600-86971600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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