Variant report

Variant	rs17794306
Chromosome Location	chr3:87027435-87027436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17023716	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62257347	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62257349	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62257351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62257352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534036	chr3:86967129-87283600	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86998800-87036000	Weak transcription	Psoas Muscle	Psoas
2	chr3:87007200-87038400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:87008000-87028800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:87008000-87032000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:87008000-87034200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:87012600-87032600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:87015000-87028400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:87016200-87039000	Weak transcription	Fetal Stomach	stomach
9	chr3:87016800-87036800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:87017000-87029400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:87017600-87039000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:87018200-87032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:87018200-87033600	Weak transcription	A549	lung
14	chr3:87018400-87036400	Weak transcription	Fetal Intestine Large	intestine
15	chr3:87018600-87034200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:87019400-87036600	Weak transcription	Fetal Brain Male	brain
17	chr3:87022800-87028000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:87024800-87028200	Genic enhancers	Placenta	Placenta
19	chr3:87025200-87027600	Genic enhancers	NHLF	lung
20	chr3:87025600-87028000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:87025800-87027800	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr3:87026400-87027600	Genic enhancers	HSMM	muscle
23	chr3:87026400-87028000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:87026400-87028000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:87026400-87028000	Enhancers	Adipose Nuclei	Adipose
26	chr3:87026400-87028000	Enhancers	HMEC	breast
27	chr3:87026400-87028200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:87026600-87027600	Weak transcription	Right Atrium	heart
29	chr3:87026600-87027800	Enhancers	Rectal Smooth Muscle	rectum
30	chr3:87026600-87027800	Enhancers	NHEK	skin
31	chr3:87026600-87030000	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:87026800-87027600	Weak transcription	Aorta	Aorta
33	chr3:87026800-87027600	Enhancers	Placenta Amnion	Placenta Amnion
34	chr3:87026800-87028000	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr3:87026800-87028000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:87026800-87028000	Genic enhancers	Fetal Muscle Leg	muscle
37	chr3:87027000-87027600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr3:87027000-87027600	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:87027000-87027800	Genic enhancers	NH-A	brain
40	chr3:87027000-87028000	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
41	chr3:87027000-87028000	Genic enhancers	Ovary	ovary
42	chr3:87027000-87029800	Genic enhancers	Osteobl	bone
43	chr3:87027200-87028000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr3:87027200-87028000	Genic enhancers	Fetal Lung	lung
45	chr3:87027200-87028000	Genic enhancers	Hela-S3	cervix
46	chr3:87027200-87028000	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
47	chr3:87027200-87028600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:87027200-87032000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr3:87027400-87027600	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
50	chr3:87027400-87028000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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