Variant report

Variant rs62257352
Chromosome Location chr3:87034390-87034391
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:86998800-87036000 Weak transcription Psoas Muscle Psoas
2 chr3:87007200-87038400 Weak transcription Fetal Adrenal Gland Adrenal Gland
3 chr3:87016200-87039000 Weak transcription Fetal Stomach stomach
4 chr3:87016800-87036800 Weak transcription iPS-20b Cell Line embryonic stem cell
5 chr3:87017600-87039000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr3:87018400-87036400 Weak transcription Fetal Intestine Large intestine
7 chr3:87019400-87036600 Weak transcription Fetal Brain Male brain
8 chr3:87028000-87035600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr3:87028000-87036200 Weak transcription HMEC breast
10 chr3:87030200-87036200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr3:87031600-87039600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr3:87032000-87034800 Enhancers Colon Smooth Muscle Colon
13 chr3:87032000-87037400 Enhancers Rectal Smooth Muscle rectum
14 chr3:87032400-87035400 Flanking Active TSS NHDF-Ad bronchial
15 chr3:87032400-87035600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr3:87032400-87035600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr3:87032400-87036000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr3:87032600-87034600 Flanking Active TSS Osteobl bone
19 chr3:87032800-87039000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr3:87032800-87039200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr3:87033000-87034600 Weak transcription Fetal Muscle Leg muscle
22 chr3:87033000-87036200 Weak transcription Aorta Aorta
23 chr3:87033000-87041000 Active TSS Placenta Placenta
24 chr3:87033400-87035200 Active TSS NHLF lung
25 chr3:87033600-87034600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
26 chr3:87033600-87034800 Enhancers A549 lung
27 chr3:87033600-87036000 Enhancers Hela-S3 cervix
28 chr3:87033600-87036200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr3:87033800-87034400 Enhancers NH-A brain
30 chr3:87033800-87034600 Transcr. at gene 5' and 3' Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr3:87033800-87036000 Enhancers Cortex derived primary cultured neurospheres brain
32 chr3:87033800-87036200 Enhancers Placenta Amnion Placenta Amnion
33 chr3:87033800-87037400 Flanking Active TSS Muscle Satellite Cultured Cells --
34 chr3:87033800-87041200 Active TSS HSMMtube muscle
35 chr3:87034000-87034400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
36 chr3:87034000-87034600 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
37 chr3:87034000-87034600 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
38 chr3:87034000-87035000 Enhancers Fetal Lung lung
39 chr3:87034000-87035800 Enhancers Adipose Nuclei Adipose
40 chr3:87034200-87034400 Flanking Active TSS Ovary ovary
41 chr3:87034200-87034800 Enhancers Breast Myoepithelial Primary Cells Breast
42 chr3:87034200-87034800 Active TSS Duodenum Smooth Muscle Duodenum
43 chr3:87034200-87034800 Active TSS Right Atrium heart
44 chr3:87034200-87034800 Flanking Active TSS HSMM muscle
45 chr3:87034200-87035600 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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