Variant report

Variant	rs62257347
Chromosome Location	chr3:87006404-87006405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:86994080..86996241-chr3:87005417..87008390,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17023716	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17794306	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2232714	0.84[ASN][1000 genomes]
rs62257346	0.84[ASN][1000 genomes]
rs62257349	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62257351	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62257352	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534036	chr3:86967129-87283600	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86986800-87014400	Weak transcription	Aorta	Aorta
2	chr3:86987400-87007400	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:86988200-87007600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:86988200-87013400	Weak transcription	Ovary	ovary
5	chr3:86993800-87014200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:86994000-87013200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:86994800-87010400	Weak transcription	Fetal Lung	lung
8	chr3:86997600-87013200	Genic enhancers	NHDF-Ad	bronchial
9	chr3:86998000-87019800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:86998600-87007600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:86998800-87007600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:86998800-87036000	Weak transcription	Psoas Muscle	Psoas
13	chr3:87000800-87007200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:87001200-87006600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr3:87003600-87007600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:87003800-87007400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:87003800-87007600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:87003800-87007600	Weak transcription	HMEC	breast
19	chr3:87003800-87014200	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:87004000-87007600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:87004000-87007600	Weak transcription	NHLF	lung
22	chr3:87004200-87007400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:87004200-87007600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr3:87004200-87014400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr3:87004400-87007600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:87004400-87010400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:87004400-87014200	Weak transcription	Adipose Nuclei	Adipose
28	chr3:87005000-87006800	Strong transcription	NH-A	brain
29	chr3:87005000-87007600	Weak transcription	Hela-S3	cervix
30	chr3:87005400-87006600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:87005400-87007000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:87005600-87007000	Strong transcription	Osteobl	bone
33	chr3:87005800-87007600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:87006200-87007800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:87006400-87006600	Strong transcription	Placenta	Placenta
36	chr3:87006400-87006600	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr3:87006400-87006800	Strong transcription	HSMMtube	muscle
38	chr3:87006400-87007200	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr3:87006400-87008400	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr3:87006400-87008400	Genic enhancers	HSMM	muscle

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