Variant report

Variant	rs17024143
Chromosome Location	chr4:148843918-148843919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10519921	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11930900	0.83[AMR][1000 genomes]
rs11934409	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11937178	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11939997	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11941546	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11942547	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11946732	0.92[AMR][1000 genomes]
rs13434578	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13435747	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17024137	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs187006	0.84[ASN][1000 genomes]
rs2118033	0.87[ASN][1000 genomes]
rs2118035	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2164530	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2164531	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2358180	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2358181	0.85[ASN][1000 genomes]
rs2635256	0.88[ASN][1000 genomes]
rs2635266	0.83[ASN][1000 genomes]
rs2635267	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2635268	0.85[ASN][1000 genomes]
rs4027114	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4027115	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4337713	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55752555	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs67913037	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72617450	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72959726	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7655265	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7666206	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7669783	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7672161	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7685779	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs975371	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs975372	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv880243	chr4:148735644-148879583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv880244	chr4:148764252-148920089	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1029845	chr4:148766290-148916437	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1030001	chr4:148773479-148916437	Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1017904	chr4:148814133-148975348	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1024596	chr4:148830472-148886915	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148786000-148861400	Weak transcription	Pancreas	Pancrea
2	chr4:148796800-148863200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:148796800-148866000	Weak transcription	Thymus	Thymus
4	chr4:148797400-148879600	Weak transcription	Gastric	stomach
5	chr4:148804600-148854400	Weak transcription	Psoas Muscle	Psoas
6	chr4:148820600-148861200	Weak transcription	Esophagus	oesophagus
7	chr4:148820800-148848800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:148824400-148854600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:148824600-148854400	Weak transcription	Right Ventricle	heart
10	chr4:148825200-148847400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr4:148825200-148848400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:148825400-148844200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:148825400-148846200	Weak transcription	Fetal Kidney	kidney
14	chr4:148825400-148861200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:148825400-148865800	Weak transcription	Fetal Lung	lung
16	chr4:148826600-148888200	Weak transcription	Fetal Thymus	thymus
17	chr4:148827400-148861200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:148829400-148864200	Weak transcription	Primary T cells from cord blood	blood
19	chr4:148830800-148845600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:148831600-148849000	Weak transcription	NH-A	brain
21	chr4:148832200-148848800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:148832200-148854400	Weak transcription	NHEK	skin
23	chr4:148832600-148845600	Weak transcription	Colon Smooth Muscle	Colon
24	chr4:148833600-148848400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:148833600-148877400	Weak transcription	Small Intestine	intestine
26	chr4:148834200-148845200	Strong transcription	HSMM	muscle
27	chr4:148834800-148849000	Weak transcription	NHLF	lung
28	chr4:148834800-148861400	Weak transcription	Fetal Intestine Large	intestine
29	chr4:148835000-148867200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:148835000-148869000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr4:148835600-148848800	Weak transcription	Fetal Stomach	stomach
32	chr4:148835600-148854400	Weak transcription	Fetal Intestine Small	intestine
33	chr4:148836400-148848400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:148836400-148861000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:148836600-148867000	Weak transcription	HMEC	breast
36	chr4:148837600-148850600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr4:148837800-148854400	Weak transcription	Left Ventricle	heart
38	chr4:148838400-148848400	Weak transcription	HUVEC	blood vessel
39	chr4:148838400-148848800	Weak transcription	NHDF-Ad	bronchial
40	chr4:148838400-148858400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr4:148838600-148848200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr4:148838600-148848800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr4:148838800-148849400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr4:148838800-148854400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr4:148839200-148844000	Weak transcription	GM12878-XiMat	blood
46	chr4:148840200-148853000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:148842000-148847400	Strong transcription	Adipose Nuclei	Adipose
48	chr4:148843000-148848800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr4:148843200-148846800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr4:148843200-148846800	Weak transcription	Fetal Muscle Trunk	muscle

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