Variant report

Variant	rs17024469
Chromosome Location	chr4:149119708-149119709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13142954	1.00[YRI][hapmap]
rs17024337	1.00[AMR][1000 genomes]
rs4122851	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4122853	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6819706	1.00[AMR][1000 genomes]
rs72647570	1.00[AMR][1000 genomes]
rs72656891	1.00[AMR][1000 genomes]
rs73853721	1.00[AMR][1000 genomes]
rs73853787	1.00[AMR][1000 genomes]
rs73855929	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149087600-149123400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:149088400-149122800	Weak transcription	Brain Angular Gyrus	brain
3	chr4:149094800-149124600	Weak transcription	Aorta	Aorta
4	chr4:149099200-149123600	Weak transcription	Brain Anterior Caudate	brain
5	chr4:149103400-149123200	Weak transcription	Small Intestine	intestine
6	chr4:149105200-149123600	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:149111800-149123400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:149112400-149137400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr4:149113000-149123400	Weak transcription	Psoas Muscle	Psoas
10	chr4:149114000-149123200	Weak transcription	Right Ventricle	heart
11	chr4:149114200-149123200	Weak transcription	Right Atrium	heart
12	chr4:149114200-149131400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:149114400-149123200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr4:149114400-149123400	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:149114400-149123400	Weak transcription	Left Ventricle	heart
16	chr4:149114600-149122200	Weak transcription	Lung	lung
17	chr4:149114600-149123400	Weak transcription	Ovary	ovary
18	chr4:149114600-149125000	Weak transcription	Fetal Intestine Small	intestine
19	chr4:149115400-149123600	Weak transcription	Fetal Kidney	kidney
20	chr4:149115400-149123800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr4:149115600-149123400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr4:149115600-149123600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr4:149115600-149123600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr4:149115600-149124200	Weak transcription	Adipose Nuclei	Adipose
25	chr4:149115600-149125000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr4:149115800-149124600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr4:149115800-149137400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr4:149116000-149124800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr4:149116400-149123600	Weak transcription	Liver	Liver
30	chr4:149117000-149123800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr4:149117200-149138000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr4:149117600-149125600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr4:149119600-149119800	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr4:149119600-149119800	Enhancers	Pancreas	Pancrea

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