Variant report

Variant	rs4122851
Chromosome Location	chr4:149112350-149112351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17024337	1.00[AMR][1000 genomes]
rs17024469	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4122853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6819706	1.00[AMR][1000 genomes]
rs72647570	1.00[AMR][1000 genomes]
rs72656891	1.00[AMR][1000 genomes]
rs73853721	1.00[AMR][1000 genomes]
rs73853787	1.00[AMR][1000 genomes]
rs73855929	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149087600-149123400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:149088000-149113200	Weak transcription	Adipose Nuclei	Adipose
3	chr4:149088000-149113600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:149088400-149113000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:149088400-149122800	Weak transcription	Brain Angular Gyrus	brain
6	chr4:149092400-149113400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:149094400-149113200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:149094800-149113200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:149094800-149124600	Weak transcription	Aorta	Aorta
10	chr4:149095200-149113600	Weak transcription	Pancreas	Pancrea
11	chr4:149099000-149116600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr4:149099200-149123600	Weak transcription	Brain Anterior Caudate	brain
13	chr4:149102200-149113400	Weak transcription	Gastric	stomach
14	chr4:149102200-149113400	Weak transcription	Right Ventricle	heart
15	chr4:149102400-149114000	Weak transcription	Ovary	ovary
16	chr4:149102600-149113200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:149103000-149114200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr4:149103200-149113200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:149103400-149123200	Weak transcription	Small Intestine	intestine
20	chr4:149104000-149113200	Weak transcription	Fetal Intestine Small	intestine
21	chr4:149104000-149114400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr4:149105000-149114800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:149105200-149113200	Weak transcription	Fetal Muscle Leg	muscle
24	chr4:149105200-149123600	Weak transcription	Brain Hippocampus Middle	brain
25	chr4:149105400-149113200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr4:149106600-149113200	Weak transcription	Lung	lung
27	chr4:149106600-149114800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr4:149109400-149116600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr4:149109800-149113800	Weak transcription	Liver	Liver
30	chr4:149111000-149118600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr4:149111200-149114000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr4:149111400-149113200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr4:149111400-149113200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr4:149111600-149114200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:149111800-149113400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr4:149111800-149123400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr4:149112000-149114000	Weak transcription	Colonic Mucosa	Colon

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