Variant report

Variant	rs17025783
Chromosome Location	chr2:40526507-40526508
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1002671	0.85[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs10490053	0.85[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs11891800	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11902975	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12995402	0.93[ASN][1000 genomes]
rs13001457	0.95[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13001473	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13005761	0.90[CEU][hapmap];0.90[ASN][1000 genomes]
rs13026979	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13031392	0.82[ASN][1000 genomes]
rs17025769	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17025800	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17025804	0.81[CHB][hapmap];0.91[ASN][1000 genomes]
rs17025810	0.85[CHB][hapmap];0.88[ASN][1000 genomes]
rs1990607	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2192769	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2192770	0.86[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs2192771	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2287051	0.95[CEU][hapmap];0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2287053	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34409901	0.94[ASN][1000 genomes]
rs34512805	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34562238	0.88[ASN][1000 genomes]
rs34609846	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34718894	0.80[ASN][1000 genomes]
rs35042618	0.88[ASN][1000 genomes]
rs35264779	0.91[ASN][1000 genomes]
rs35639785	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35776185	0.96[ASN][1000 genomes]
rs35892964	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35970998	0.87[ASN][1000 genomes]
rs35977357	0.96[ASN][1000 genomes]
rs4952403	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4952603	0.95[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4952604	0.95[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4952605	0.95[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4952607	0.95[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4952608	0.87[ASN][1000 genomes]
rs4952609	0.95[CEU][hapmap]
rs56707698	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62150808	0.96[ASN][1000 genomes]
rs62150809	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62150812	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66566834	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6729923	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6730154	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68003012	0.88[ASN][1000 genomes]
rs727477	0.90[CEU][hapmap]
rs72796683	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72796684	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs741287	0.95[CEU][hapmap];0.80[ASN][1000 genomes]
rs759387	0.80[ASN][1000 genomes]
rs994419	0.85[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs994420	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv34071	chr2:40435231-40578229	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv962524	chr2:40523031-40530466	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40512800-40530000	Weak transcription	NHDF-Ad	bronchial
2	chr2:40515200-40527600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:40515200-40531400	Weak transcription	Osteobl	bone
4	chr2:40515800-40530400	Weak transcription	Right Ventricle	heart
5	chr2:40518200-40540600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr2:40519800-40527400	Weak transcription	HSMM	muscle
7	chr2:40520400-40530000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr2:40521000-40527600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:40524400-40526800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:40526000-40527000	Enhancers	Left Ventricle	heart
11	chr2:40526200-40527600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:40526200-40527600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr2:40526400-40526800	Genic enhancers	Fetal Heart	heart
14	chr2:40526400-40530000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr2:40526400-40531400	Weak transcription	Monocytes-CD14+_RO01746	blood

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