Variant report

Variant	rs35970998
Chromosome Location	chr2:40558923-40558924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1002671	0.87[ASN][1000 genomes]
rs10490053	0.86[ASN][1000 genomes]
rs11902975	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12995402	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13001457	0.88[ASN][1000 genomes]
rs13001473	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13005761	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13026979	0.82[ASN][1000 genomes]
rs13031392	0.87[ASN][1000 genomes]
rs17025769	0.88[ASN][1000 genomes]
rs17025783	0.87[ASN][1000 genomes]
rs17025800	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17025804	0.95[ASN][1000 genomes]
rs17025810	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1990607	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2192769	0.89[ASN][1000 genomes]
rs2192770	0.85[ASN][1000 genomes]
rs2287051	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2287053	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34409901	0.82[ASN][1000 genomes]
rs34512805	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34562238	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34609846	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34718894	0.87[ASN][1000 genomes]
rs35042618	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35264779	0.95[ASN][1000 genomes]
rs35639785	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35776185	0.88[ASN][1000 genomes]
rs35892964	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35977357	0.89[ASN][1000 genomes]
rs4952403	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4952603	0.88[ASN][1000 genomes]
rs4952604	0.88[ASN][1000 genomes]
rs4952605	0.88[ASN][1000 genomes]
rs4952607	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4952608	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4952609	0.87[EUR][1000 genomes]
rs56707698	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62150808	0.86[ASN][1000 genomes]
rs62150809	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62150812	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66566834	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6716469	0.92[EUR][1000 genomes]
rs6729923	0.93[ASN][1000 genomes]
rs6730154	0.93[ASN][1000 genomes]
rs68003012	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72796683	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72796684	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs741287	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs759387	0.87[ASN][1000 genomes]
rs994419	0.82[ASN][1000 genomes]
rs994420	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv34071	chr2:40435231-40578229	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1010508	chr2:40526981-40590777	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv535655	chr2:40526981-40590777	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2757794	chr2:40547947-40733776	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2759044	chr2:40547947-40733776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40542400-40559800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:40543200-40578800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr2:40545200-40559200	Weak transcription	HSMM	muscle
4	chr2:40549200-40559800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:40549400-40559000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr2:40549400-40565200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr2:40550400-40560400	Enhancers	Fetal Heart	heart
8	chr2:40552800-40590600	Weak transcription	Fetal Kidney	kidney
9	chr2:40555600-40560000	Enhancers	Colon Smooth Muscle	Colon
10	chr2:40555600-40560200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr2:40555800-40559200	Enhancers	Rectal Smooth Muscle	rectum
12	chr2:40556600-40559000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:40556600-40559000	Weak transcription	Hela-S3	cervix
14	chr2:40556600-40563000	Weak transcription	Right Ventricle	heart
15	chr2:40556800-40559200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:40556800-40559200	Weak transcription	Fetal Lung	lung
17	chr2:40557000-40559000	Weak transcription	Fetal Stomach	stomach
18	chr2:40557000-40559000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr2:40557000-40559200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr2:40557000-40559200	Weak transcription	Fetal Intestine Small	intestine
21	chr2:40557000-40559600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:40557000-40568200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr2:40557200-40559000	Weak transcription	NHDF-Ad	bronchial
24	chr2:40557400-40559600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr2:40557600-40559200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr2:40557600-40559200	Weak transcription	Fetal Intestine Large	intestine
27	chr2:40558400-40559800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr2:40558800-40559400	Enhancers	Primary hematopoietic stem cells	blood
29	chr2:40558800-40559600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:40558800-40559600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr2:40558800-40560200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr2:40558800-40560400	Enhancers	HUVEC	blood vessel
33	chr2:40558800-40561200	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links