Variant report
| Variant | rs17025936 |
|---|---|
| Chromosome Location | chr4:150135657-150135658 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-DCLK2-3 | chr4:150135596-150135683 | NONHSAT098714 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10021160 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12171349 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13434525 | 0.88[ASN][1000 genomes] |
| rs13435568 | 0.88[ASN][1000 genomes] |
| rs13435663 | 0.88[ASN][1000 genomes] |
| rs17025856 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17025858 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28397870 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28572323 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28623435 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28795081 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41448851 | 0.87[CHD][hapmap] |
| rs57155021 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59885951 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72951733 | 0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72967935 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72967938 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72967944 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9307854 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9993655 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9994799 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv880247 | chr4:150057979-150159936 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1022438 | chr4:150066349-150196711 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv595687 | chr4:150070596-150178533 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv880248 | chr4:150092178-150200706 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
