Variant report

Variant	rs17026130
Chromosome Location	chr1:216298733-216298734
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCTD3-9	chr1:216298699-216299105	NONHSAT009483

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10495017	1.00[CEU][hapmap]
rs10495018	1.00[CEU][hapmap]
rs10864233	0.85[CHB][hapmap]
rs11120739	0.81[CHB][hapmap]
rs17026164	1.00[CEU][hapmap]
rs17026167	1.00[CEU][hapmap]
rs17026170	1.00[CEU][hapmap]
rs17026174	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs17026175	1.00[CEU][hapmap]
rs17026208	1.00[ASW][hapmap];0.81[CHB][hapmap]
rs17026219	0.81[CHB][hapmap]
rs1811900	0.83[CHB][hapmap]
rs1811901	0.82[CHB][hapmap]
rs2199101	0.83[CHB][hapmap]
rs2199102	0.83[CHB][hapmap]
rs2669057	1.00[ASW][hapmap]
rs407590	1.00[ASW][hapmap]
rs4511139	0.83[TSI][hapmap]
rs588516	1.00[ASW][hapmap]
rs600535	1.00[ASW][hapmap]
rs616523	0.83[CHB][hapmap]
rs659875	1.00[ASW][hapmap]
rs9660493	0.83[CHB][hapmap]
rs9660965	0.81[CHB][hapmap]
rs9661602	0.81[CHB][hapmap]
rs9727182	0.83[CHB][hapmap]
rs9728510	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv873176	chr1:216249570-216363137	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1007720	chr1:216268796-216306127	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv999211	chr1:216268796-216329336	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1006028	chr1:216268796-216432545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216291000-216300200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:216296000-216301600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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