Variant report

Variant	rs9661602
Chromosome Location	chr1:216335575-216335576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:216333170..216335815-chr1:216426543..216429125,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10495017	0.81[CHB][hapmap]
rs10495018	0.88[CHB][hapmap]
rs1066176	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs11120739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs11120740	0.83[CHB][hapmap]
rs1115436	0.94[CHB][hapmap]
rs12561852	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1324330	0.83[CHB][hapmap]
rs17026130	0.81[CHB][hapmap]
rs17026164	0.88[CHB][hapmap]
rs17026167	0.88[CHB][hapmap]
rs17026170	0.88[CHB][hapmap]
rs17026174	0.87[CHB][hapmap]
rs17026175	0.86[CHB][hapmap];0.81[YRI][hapmap]
rs17026208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17026219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1805049	0.83[CHB][hapmap]
rs2034960	0.83[CHB][hapmap]
rs2274117	0.83[CHB][hapmap]
rs2669057	0.86[CEU][hapmap];0.88[CHB][hapmap]
rs301736	0.94[CHB][hapmap]
rs301737	0.94[CHB][hapmap]
rs301742	0.94[CHB][hapmap]
rs301744	0.94[CHB][hapmap]
rs301745	0.94[CHB][hapmap]
rs301750	0.94[CEU][hapmap];0.88[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs301752	0.94[CEU][hapmap];0.88[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs301759	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs301760	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs301761	0.83[CEU][hapmap]
rs3754064	0.83[CHB][hapmap]
rs3767692	0.83[CHB][hapmap]
rs378340	0.87[CEU][hapmap];0.88[CHB][hapmap]
rs385463	0.83[CEU][hapmap]
rs386654	0.87[CEU][hapmap]
rs401269	0.87[CEU][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs404925	0.83[CEU][hapmap]
rs407590	0.87[CEU][hapmap];0.88[CHB][hapmap];0.81[EUR][1000 genomes]
rs415508	0.87[CEU][hapmap];0.88[CHB][hapmap]
rs430652	0.94[CHB][hapmap]
rs439940	0.93[CEU][hapmap];0.87[CHB][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs588516	0.87[CEU][hapmap];0.88[CHB][hapmap]
rs592642	0.83[CEU][hapmap];0.88[CHB][hapmap]
rs600535	0.87[CEU][hapmap];0.88[CHB][hapmap]
rs62906	0.87[CEU][hapmap];0.88[CHB][hapmap]
rs643416	0.93[CHB][hapmap]
rs646094	0.87[CEU][hapmap];0.88[CHB][hapmap]
rs648564	0.87[ASN][1000 genomes]
rs659875	0.87[CEU][hapmap];0.88[CHB][hapmap]
rs669616	0.88[CEU][hapmap];0.88[CHB][hapmap]
rs677648	0.94[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs680410	0.87[CEU][hapmap]
rs696719	0.83[CHB][hapmap]
rs700015	0.83[CHB][hapmap]
rs773498	0.83[CHB][hapmap]
rs9660965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv873176	chr1:216249570-216363137	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1006028	chr1:216268796-216432545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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