Variant report

Variant	rs680410
Chromosome Location	chr1:216440163-216440164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10864235	0.85[JPT][hapmap]
rs11120739	0.86[CEU][hapmap]
rs11120740	0.83[CHB][hapmap]
rs11120747	0.90[JPT][hapmap]
rs1146766	0.85[JPT][hapmap]
rs12129284	0.83[CHB][hapmap]
rs1324330	0.83[CHB][hapmap]
rs1512581	0.83[JPT][hapmap]
rs1578245	0.80[JPT][hapmap]
rs17026208	0.87[CEU][hapmap]
rs17026219	0.86[CEU][hapmap]
rs1805049	0.83[CHB][hapmap]
rs2034960	0.83[CHB][hapmap]
rs2274117	0.83[CHB][hapmap]
rs2669057	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[GIH][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs301750	0.93[CEU][hapmap];0.89[CHB][hapmap]
rs301752	0.93[CEU][hapmap];0.89[CHB][hapmap]
rs301761	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs3754064	0.83[CHB][hapmap]
rs3767692	0.83[CHB][hapmap]
rs378340	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[GIH][hapmap]
rs385463	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs386654	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap]
rs401269	0.87[CEU][hapmap];0.83[GIH][hapmap]
rs404925	1.00[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs407590	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[GIH][hapmap]
rs415508	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[GIH][hapmap]
rs439940	0.93[CEU][hapmap];0.88[CHB][hapmap];0.89[GIH][hapmap]
rs588516	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[GIH][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs592642	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[EUR][1000 genomes]
rs600535	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[GIH][hapmap]
rs62906	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[GIH][hapmap]
rs636457	0.80[EUR][1000 genomes]
rs646094	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[GIH][hapmap]
rs659875	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[GIH][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs669616	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[EUR][1000 genomes]
rs696719	0.83[CHB][hapmap]
rs696720	0.85[JPT][hapmap]
rs700015	0.83[CHB][hapmap]
rs700021	0.85[JPT][hapmap]
rs700022	0.85[JPT][hapmap]
rs773498	0.83[CHB][hapmap]
rs810115	0.85[JPT][hapmap]
rs9660965	0.87[CEU][hapmap]
rs9661602	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv998835	chr1:216439672-216482235	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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