Variant report

Variant	rs386654
Chromosome Location	chr1:216431962-216431963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10864235	0.95[CHB][hapmap];0.96[CHD][hapmap];0.95[JPT][hapmap]
rs11120739	0.86[CEU][hapmap]
rs11120747	0.95[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap]
rs1146766	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1159143	0.87[TSI][hapmap]
rs12129284	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1578245	0.90[JPT][hapmap]
rs17026208	0.87[CEU][hapmap];0.85[TSI][hapmap]
rs17026219	0.86[CEU][hapmap]
rs2669057	1.00[CEU][hapmap];0.96[GIH][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs301750	0.93[CEU][hapmap]
rs301752	0.93[CEU][hapmap]
rs301761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs378340	1.00[CEU][hapmap];0.96[GIH][hapmap];0.93[TSI][hapmap]
rs385463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs401269	0.87[CEU][hapmap];0.81[GIH][hapmap]
rs404925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs407590	1.00[CEU][hapmap];0.88[GIH][hapmap];0.82[TSI][hapmap]
rs415508	1.00[CEU][hapmap];0.88[GIH][hapmap];0.82[TSI][hapmap]
rs439940	0.93[CEU][hapmap];0.88[GIH][hapmap]
rs588516	1.00[CEU][hapmap];0.96[GIH][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs592642	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs600535	1.00[CEU][hapmap];0.96[GIH][hapmap];0.93[TSI][hapmap]
rs62906	1.00[CEU][hapmap];0.96[GIH][hapmap];0.93[TSI][hapmap]
rs636457	0.83[EUR][1000 genomes]
rs646094	1.00[CEU][hapmap];0.88[GIH][hapmap]
rs659875	1.00[CEU][hapmap];0.96[GIH][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs669616	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs680410	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap]
rs696720	0.95[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap]
rs700021	0.95[CHB][hapmap];0.96[CHD][hapmap];0.95[JPT][hapmap]
rs700022	0.94[CHB][hapmap];0.96[CHD][hapmap];0.95[JPT][hapmap]
rs773042	0.95[CHB][hapmap];0.96[CHD][hapmap];0.84[JPT][hapmap]
rs810115	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9660965	0.87[CEU][hapmap]
rs9661602	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006028	chr1:216268796-216432545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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