Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10864235	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11120739	0.82[CEU][hapmap]
rs11120747	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1146766	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12129284	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1578245	0.90[JPT][hapmap]
rs17026208	0.87[CEU][hapmap]
rs17026219	0.82[CEU][hapmap]
rs2669057	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs301750	0.88[CEU][hapmap]
rs301752	0.88[CEU][hapmap]
rs301761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs378340	1.00[CEU][hapmap]
rs385463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs386654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs401269	0.87[CEU][hapmap]
rs407590	1.00[CEU][hapmap]
rs415508	1.00[CEU][hapmap]
rs439940	0.93[CEU][hapmap]
rs588516	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs592642	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs600535	1.00[CEU][hapmap]
rs62906	1.00[CEU][hapmap]
rs636457	0.83[EUR][1000 genomes]
rs646094	1.00[CEU][hapmap]
rs659875	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs669616	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs680410	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs696720	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs700021	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs700022	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs773042	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs810115	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9660965	0.83[CEU][hapmap]
rs9661602	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006028	chr1:216268796-216432545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216420400-216423000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:216420600-216422800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search: