Variant report

Variant	rs1578245
Chromosome Location	chr1:216445356-216445357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10779666	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10779667	0.86[CEU][hapmap];0.95[CHB][hapmap];0.81[LWK][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap]
rs10864235	0.80[CHB][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap]
rs10864237	0.83[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.92[GIH][hapmap];0.81[LWK][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10864238	0.81[CEU][hapmap]
rs10864239	0.81[CEU][hapmap]
rs11120747	0.80[CHB][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs11120752	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs11120758	0.81[CEU][hapmap]
rs11120762	0.81[CEU][hapmap]
rs1146766	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs1159143	0.90[CHB][hapmap]
rs12062534	0.90[CHB][hapmap]
rs12062586	0.91[CEU][hapmap];0.95[CHB][hapmap]
rs12129284	0.80[CEU][hapmap];0.87[JPT][hapmap]
rs12134474	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1339962	0.81[CEU][hapmap]
rs1339963	0.81[CEU][hapmap]
rs1355630	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1398382	0.81[CEU][hapmap]
rs1588657	0.81[CEU][hapmap]
rs1849376	0.88[CEU][hapmap];0.90[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1996043	0.91[CEU][hapmap]
rs2809299	0.81[CEU][hapmap]
rs301761	0.90[JPT][hapmap]
rs3754064	0.86[MEX][hapmap]
rs385463	0.89[JPT][hapmap]
rs386654	0.90[JPT][hapmap]
rs404925	0.90[JPT][hapmap]
rs4846269	0.83[ASW][hapmap];0.90[CEU][hapmap];0.90[CHB][hapmap];0.92[GIH][hapmap];0.95[TSI][hapmap]
rs6604658	0.81[CEU][hapmap]
rs6660228	0.81[CEU][hapmap]
rs6660406	0.89[CHB][hapmap]
rs6703213	0.90[CHB][hapmap]
rs680410	0.80[JPT][hapmap]
rs696720	0.80[CHB][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap]
rs700015	0.86[MEX][hapmap]
rs700021	0.80[CHB][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs700022	0.95[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs7539376	0.81[CEU][hapmap]
rs7539597	0.81[CEU][hapmap]
rs773042	0.80[CHB][hapmap];0.85[JPT][hapmap];0.88[TSI][hapmap]
rs810115	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs974601	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv998835	chr1:216439672-216482235	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216444800-216446600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr1:216445000-216446000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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