Variant report

Variant	rs4846269
Chromosome Location	chr1:216463774-216463775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10779666	0.85[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap]
rs10779667	0.94[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs10864235	0.86[TSI][hapmap]
rs10864237	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10864238	0.90[CEU][hapmap];0.81[GIH][hapmap];0.84[EUR][1000 genomes]
rs10864239	0.90[CEU][hapmap];0.81[GIH][hapmap]
rs11120747	0.86[TSI][hapmap]
rs11120752	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11120758	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs11120762	0.90[CEU][hapmap];0.81[GIH][hapmap]
rs1159143	0.90[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs12062534	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs12062586	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12134474	0.85[CEU][hapmap];0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1339962	0.90[CEU][hapmap]
rs1339963	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs1355630	0.90[CEU][hapmap];0.81[GIH][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1398382	0.90[CEU][hapmap];0.89[YRI][hapmap]
rs1578245	0.83[ASW][hapmap];0.90[CEU][hapmap];0.90[CHB][hapmap];0.92[GIH][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1588657	0.90[CEU][hapmap];0.80[GIH][hapmap];0.80[EUR][1000 genomes]
rs1849376	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1996043	1.00[CEU][hapmap]
rs2809299	0.90[CEU][hapmap];0.81[GIH][hapmap]
rs6604658	0.90[CEU][hapmap];0.81[GIH][hapmap]
rs6660228	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs6660406	0.89[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs6703213	0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs696720	0.86[TSI][hapmap]
rs700021	0.86[TSI][hapmap]
rs700022	0.86[TSI][hapmap]
rs7521264	0.89[CEU][hapmap]
rs7539376	0.90[CEU][hapmap]
rs7539597	0.90[CEU][hapmap];0.81[GIH][hapmap]
rs773042	0.83[TSI][hapmap]
rs974601	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv998835	chr1:216439672-216482235	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2830096	chr1:216454483-216475542	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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