Variant report

Variant	rs12062586
Chromosome Location	chr1:216469868-216469869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10779666	0.83[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs10779667	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10864237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10864238	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs10864239	0.91[CEU][hapmap]
rs11120752	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11120758	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs11120762	0.90[CEU][hapmap]
rs1159143	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12062534	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12134474	0.83[CEU][hapmap];0.95[CHB][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1339962	0.91[CEU][hapmap]
rs1339963	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs1355630	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1398382	0.91[CEU][hapmap];0.90[YRI][hapmap]
rs1578245	0.91[CEU][hapmap];0.95[CHB][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1588657	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs1849376	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1996043	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs2809299	0.90[CEU][hapmap]
rs4846269	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6604658	0.91[CEU][hapmap]
rs6660228	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs6660406	0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs6703213	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7521264	0.90[CEU][hapmap]
rs7539376	0.91[CEU][hapmap]
rs7539597	0.91[CEU][hapmap]
rs974601	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv998835	chr1:216439672-216482235	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2830096	chr1:216454483-216475542	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3333916	chr1:216466329-216469927	Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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