Variant report

Variant	rs10779667
Chromosome Location	chr1:216452846-216452847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10779666	0.90[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap]
rs10864235	0.88[TSI][hapmap]
rs10864237	0.94[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10864238	0.86[CEU][hapmap];0.82[GIH][hapmap]
rs10864239	0.86[CEU][hapmap];0.82[GIH][hapmap]
rs11120747	0.88[TSI][hapmap]
rs11120752	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11120758	0.86[CEU][hapmap]
rs11120762	0.85[CEU][hapmap];0.82[GIH][hapmap]
rs1159143	0.95[CHB][hapmap];0.96[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap]
rs12062534	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12062586	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12134474	0.90[CEU][hapmap];0.95[CHB][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1339962	0.86[CEU][hapmap]
rs1339963	0.86[CEU][hapmap]
rs1355630	0.86[CEU][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap];0.81[AMR][1000 genomes]
rs1398382	0.86[CEU][hapmap];0.89[YRI][hapmap]
rs1578245	0.86[CEU][hapmap];0.95[CHB][hapmap];0.81[LWK][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1588657	0.86[CEU][hapmap];0.82[GIH][hapmap]
rs1849376	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1996043	0.95[CEU][hapmap];0.81[CHB][hapmap]
rs2809299	0.85[CEU][hapmap];0.82[GIH][hapmap]
rs4846269	0.94[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs6604658	0.86[CEU][hapmap];0.82[GIH][hapmap]
rs6660228	0.86[CEU][hapmap]
rs6660406	0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs6703213	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs696720	0.88[TSI][hapmap]
rs700021	0.88[TSI][hapmap]
rs700022	0.88[TSI][hapmap]
rs7521264	0.84[CEU][hapmap]
rs7539376	0.86[CEU][hapmap]
rs7539597	0.86[CEU][hapmap];0.82[GIH][hapmap]
rs773042	0.86[TSI][hapmap]
rs974601	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv998835	chr1:216439672-216482235	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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