Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10779666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap]
rs10779667	0.90[CEU][hapmap];0.95[CHB][hapmap]
rs10864235	0.80[CHB][hapmap]
rs10864237	0.86[CEU][hapmap];0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11120747	0.80[CHB][hapmap]
rs11120752	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs1146766	0.81[CHB][hapmap]
rs1159143	0.90[CHB][hapmap]
rs12062534	0.90[CHB][hapmap]
rs12062586	0.83[CEU][hapmap];0.95[CHB][hapmap]
rs1578245	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1849376	0.90[CHB][hapmap];0.90[ASN][1000 genomes]
rs1996043	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs4846269	0.85[CEU][hapmap];0.90[CHB][hapmap]
rs6660406	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs6703213	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs696720	0.80[CHB][hapmap]
rs700021	0.80[CHB][hapmap]
rs773042	0.80[CHB][hapmap]
rs810115	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv998835	chr1:216439672-216482235	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216446000-216446800	Enhancers	H1 Cell Line	embryonic stem cell

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