Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10779666	0.90[CHB][hapmap]
rs10779667	0.95[CHB][hapmap];0.96[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap]
rs10864237	0.95[CHB][hapmap];0.96[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.95[ASN][1000 genomes]
rs11120752	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs12062534	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12062586	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12134474	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs1473829	0.88[ASW][hapmap];0.82[CEU][hapmap];0.88[LWK][hapmap];0.81[YRI][hapmap]
rs1512581	1.00[CEU][hapmap]
rs1578245	0.90[CHB][hapmap]
rs17042212	0.85[GIH][hapmap]
rs1849376	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2669057	0.81[TSI][hapmap]
rs378340	0.81[TSI][hapmap]
rs386654	0.87[TSI][hapmap]
rs4846269	0.90[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs588516	0.81[TSI][hapmap]
rs600535	0.81[TSI][hapmap]
rs62906	0.81[TSI][hapmap]
rs659875	0.81[TSI][hapmap]
rs6660406	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6703213	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv998835	chr1:216439672-216482235	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2830096	chr1:216454483-216475542	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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