Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10779666	0.84[JPT][hapmap]
rs11120756	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11120757	0.86[CEU][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1159143	0.88[ASW][hapmap];0.82[CEU][hapmap];0.88[LWK][hapmap];0.81[YRI][hapmap]
rs11801737	0.88[CEU][hapmap];0.84[TSI][hapmap]
rs11803923	0.91[EUR][1000 genomes]
rs12062534	0.88[CEU][hapmap];0.81[YRI][hapmap]
rs12407759	0.88[CEU][hapmap]
rs1355630	0.82[AMR][1000 genomes]
rs1512581	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1606357	0.88[CEU][hapmap]
rs17042212	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes]
rs1805050	0.88[CEU][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs1849376	0.88[CEU][hapmap];0.84[AMR][1000 genomes]
rs1996043	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs2089947	0.88[CEU][hapmap];0.89[TSI][hapmap]
rs2137402	0.88[CEU][hapmap]
rs2791289	0.88[CEU][hapmap]
rs2809297	0.85[CEU][hapmap]
rs4846660	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs61584034	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6660406	0.81[YRI][hapmap];0.83[AFR][1000 genomes]
rs6703213	0.80[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv998835	chr1:216439672-216482235	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2830096	chr1:216454483-216475542	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv527827	chr1:216470107-216475542	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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