Variant report

Variant	rs4846660
Chromosome Location	chr1:216486605-216486606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10779261	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs11117565	0.92[JPT][hapmap]
rs11117568	0.92[JPT][hapmap]
rs11117569	0.92[JPT][hapmap]
rs11117573	0.84[JPT][hapmap]
rs11117575	0.92[JPT][hapmap]
rs11117576	0.92[JPT][hapmap]
rs11120756	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11120757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11801737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11803923	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12407759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1473829	0.88[CEU][hapmap]
rs1606357	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs17042212	0.81[EUR][1000 genomes]
rs1805050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2089947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2137402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2669050	0.92[JPT][hapmap]
rs2669051	0.92[JPT][hapmap]
rs2669052	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs2669056	0.92[JPT][hapmap]
rs2791289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791290	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791292	0.92[JPT][hapmap]
rs2809295	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs2809297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2809300	0.92[JPT][hapmap]
rs4253963	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs4314947	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4350256	0.91[JPT][hapmap]
rs4420153	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs4431908	0.92[JPT][hapmap]
rs4443953	0.92[JPT][hapmap]
rs4488081	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs4846428	0.92[JPT][hapmap]
rs61584034	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544306	0.92[JPT][hapmap]
rs7550759	0.84[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216484200-216486800	Weak transcription	NHLF	lung
2	chr1:216484800-216488200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:216486200-216487400	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links