Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10779667	0.86[CEU][hapmap];0.89[YRI][hapmap]
rs10864237	0.91[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10864238	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10864239	1.00[CEU][hapmap]
rs11117565	0.82[CEU][hapmap]
rs11120752	0.91[CEU][hapmap];0.90[YRI][hapmap]
rs11120758	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11120762	1.00[CEU][hapmap]
rs12062586	0.91[CEU][hapmap];0.90[YRI][hapmap]
rs1339962	1.00[CEU][hapmap]
rs1339963	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1355630	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1578245	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1588657	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1849376	0.90[CEU][hapmap];0.85[CHB][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1996043	0.91[CEU][hapmap]
rs2809299	1.00[CEU][hapmap]
rs4846269	0.90[CEU][hapmap];0.89[YRI][hapmap]
rs6604658	1.00[CEU][hapmap]
rs6660228	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7521264	1.00[CEU][hapmap]
rs7539376	1.00[CEU][hapmap]
rs7539597	1.00[CEU][hapmap]
rs974601	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv998835	chr1:216439672-216482235	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2830096	chr1:216454483-216475542	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv527827	chr1:216470107-216475542	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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