Variant report

Variant	rs11120740
Chromosome Location	chr1:216374283-216374284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1066176	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs11120739	0.83[CHB][hapmap]
rs1324330	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17026208	0.83[CHB][hapmap]
rs17026219	0.83[CHB][hapmap]
rs1805049	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2034960	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2274117	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2669057	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs301750	0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs301752	0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs301759	0.91[CEU][hapmap];0.88[CHB][hapmap]
rs301760	0.91[CEU][hapmap];0.89[CHB][hapmap]
rs3754064	1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs3767692	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs3767693	0.84[CHB][hapmap]
rs378340	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs401269	0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs407590	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs415508	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs430652	0.92[CEU][hapmap]
rs439940	0.94[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs4971260	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs588516	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs592642	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs600535	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs62906	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs646094	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs659875	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs669616	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs677648	0.91[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs680410	0.83[CHB][hapmap]
rs696719	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs700015	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs773498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9660965	0.83[CHB][hapmap]
rs9661602	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006028	chr1:216268796-216432545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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