Variant report

Variant	rs17026578
Chromosome Location	chr2:85932644-85932645
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:85878852..85881419-chr2:85931468..85933087,2	MCF-7	breast:
2	chr2:85932175..85937503-chr2:85937871..85941981,7	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11885917	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11887600	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11887686	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11896795	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899443	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926903	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73943282	1.00[ASN][1000 genomes]
rs73943284	1.00[ASN][1000 genomes]
rs9309623	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874459	chr2:85828014-85939207	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv874460	chr2:85828014-85941074	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv874461	chr2:85853653-85939207	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv874462	chr2:85853653-85941074	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv874463	chr2:85853653-85946708	Strong transcription Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv874465	chr2:85898898-85939207	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv874466	chr2:85909026-85939207	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv874467	chr2:85916487-85946708	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv874468	chr2:85926598-86001255	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85926000-85945200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:85928000-85934800	Enhancers	Hela-S3	cervix
3	chr2:85930000-85934200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:85930200-85934000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:85930400-85934800	Enhancers	Primary B cells from peripheral blood	blood
6	chr2:85930800-85933400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr2:85931200-85934800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr2:85931200-85935200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:85931200-85941600	Enhancers	Liver	Liver
10	chr2:85931400-85934400	Enhancers	Lung	lung
11	chr2:85931400-85937800	Enhancers	Adipose Nuclei	Adipose
12	chr2:85931600-85934200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr2:85931600-85934400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:85931600-85941000	Enhancers	Primary hematopoietic stem cells	blood
15	chr2:85932000-85932800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr2:85932000-85933000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:85932000-85933000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr2:85932000-85933000	Flanking Active TSS	GM12878-XiMat	blood
19	chr2:85932000-85933600	Enhancers	K562	blood
20	chr2:85932000-85934000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr2:85932000-85934400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr2:85932000-85934400	Enhancers	Fetal Thymus	thymus
23	chr2:85932000-85934400	Enhancers	Psoas Muscle	Psoas
24	chr2:85932000-85934800	Enhancers	HSMM	muscle
25	chr2:85932000-85935200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:85932000-85935200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr2:85932200-85932800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr2:85932200-85932800	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr2:85932200-85932800	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr2:85932200-85933400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr2:85932200-85933400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr2:85932200-85933600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:85932200-85933800	Enhancers	NHEK	skin
34	chr2:85932200-85934200	Enhancers	Spleen	Spleen
35	chr2:85932200-85934800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr2:85932200-85934800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr2:85932200-85934800	Enhancers	Duodenum Mucosa	Duodenum
38	chr2:85932200-85934800	Enhancers	HMEC	breast
39	chr2:85932200-85934800	Enhancers	HSMMtube	muscle
40	chr2:85932200-85934800	Enhancers	NH-A	brain
41	chr2:85932200-85934800	Enhancers	NHLF	lung
42	chr2:85932400-85932800	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr2:85932400-85932800	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr2:85932400-85932800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr2:85932400-85932800	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr2:85932400-85932800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr2:85932400-85932800	Enhancers	Brain Substantia Nigra	brain
48	chr2:85932400-85932800	Enhancers	Colon Smooth Muscle	Colon
49	chr2:85932400-85932800	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr2:85932400-85932800	Enhancers	Sigmoid Colon	Sigmoid Colon

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