Variant report

Variant	rs73943284
Chromosome Location	chr2:85946228-85946229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:85944805..85946423-chr2:85948836..85951563,2	K562	blood:
2	chr2:85944996..85948043-chr2:85949115..85952317,3	MCF-7	breast:
3	chr2:85938431..85940449-chr2:85945022..85946831,2	MCF-7	breast:
4	chr2:85941112..85944242-chr2:85945842..85948682,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11885917	1.00[ASN][1000 genomes]
rs11887600	1.00[ASN][1000 genomes]
rs11887686	1.00[ASN][1000 genomes]
rs11896795	1.00[ASN][1000 genomes]
rs11899443	1.00[ASN][1000 genomes]
rs17026578	1.00[ASN][1000 genomes]
rs72926903	1.00[ASN][1000 genomes]
rs73943282	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73943289	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73943290	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73943292	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73943294	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73943295	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73943296	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7571652	1.00[EUR][1000 genomes]
rs7583990	1.00[EUR][1000 genomes]
rs9309623	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874463	chr2:85853653-85946708	Strong transcription Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv874467	chr2:85916487-85946708	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv874468	chr2:85926598-86001255	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85932800-85946600	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:85939200-85946600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr2:85940200-85946600	Weak transcription	Primary B cells from cord blood	blood
4	chr2:85940200-85947800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr2:85941200-85967400	Weak transcription	Esophagus	oesophagus
6	chr2:85941400-85946400	Weak transcription	Psoas Muscle	Psoas
7	chr2:85941600-85946600	Weak transcription	Adipose Nuclei	Adipose
8	chr2:85941600-85946600	Weak transcription	Right Atrium	heart
9	chr2:85943800-85951800	Weak transcription	Lung	lung
10	chr2:85944000-85946400	Weak transcription	Left Ventricle	heart
11	chr2:85944000-85946600	Weak transcription	Fetal Heart	heart
12	chr2:85944000-85951600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr2:85944600-85947200	Enhancers	Stomach Mucosa	stomach
14	chr2:85945200-85946600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr2:85945200-85946600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr2:85945200-85951000	Weak transcription	Placenta	Placenta
17	chr2:85945400-85946400	Weak transcription	Gastric	stomach
18	chr2:85945600-85950800	Weak transcription	NHDF-Ad	bronchial
19	chr2:85946000-85946400	Enhancers	Duodenum Mucosa	Duodenum
20	chr2:85946000-85946400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr2:85946000-85947000	Enhancers	Fetal Intestine Small	intestine
22	chr2:85946000-85947000	Enhancers	Pancreas	Pancrea
23	chr2:85946000-85947600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr2:85946200-85946400	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr2:85946200-85946400	Enhancers	Right Ventricle	heart
26	chr2:85946200-85946800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr2:85946200-85947000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr2:85946200-85947200	Enhancers	Ovary	ovary

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