Variant report

Variant	rs73943295
Chromosome Location	chr2:85949112-85949113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs73943282	0.82[AMR][1000 genomes]
rs73943284	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73943289	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73943290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73943292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73943294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73943296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7571652	1.00[EUR][1000 genomes]
rs7583990	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874468	chr2:85926598-86001255	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85941200-85967400	Weak transcription	Esophagus	oesophagus
2	chr2:85943800-85951800	Weak transcription	Lung	lung
3	chr2:85944000-85951600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:85945200-85951000	Weak transcription	Placenta	Placenta
5	chr2:85945600-85950800	Weak transcription	NHDF-Ad	bronchial
6	chr2:85946800-85951200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr2:85947200-85950000	Weak transcription	Adipose Nuclei	Adipose
8	chr2:85947200-85951800	Weak transcription	Right Atrium	heart
9	chr2:85947200-85952200	Weak transcription	Ovary	ovary
10	chr2:85947600-85950200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr2:85947600-85950400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr2:85947600-85951800	Weak transcription	Left Ventricle	heart
13	chr2:85947600-85952000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr2:85947600-85956600	Weak transcription	Right Ventricle	heart
15	chr2:85947600-85957000	Weak transcription	Psoas Muscle	Psoas
16	chr2:85948800-85949800	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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