Variant report
| Variant | rs17026723 |
|---|---|
| Chromosome Location | chr4:98332495-98332496 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:98326975..98329466-chr4:98330567..98333090,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs11930232 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17026708 | 0.94[AFR][1000 genomes] |
| rs17026709 | 1.00[ASN][1000 genomes] |
| rs17026736 | 1.00[ASN][1000 genomes] |
| rs1817365 | 0.82[CHB][hapmap] |
| rs35632782 | 1.00[ASN][1000 genomes] |
| rs59306866 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59931498 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60481717 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72885552 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72887269 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72887276 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879640 | chr4:97711707-98697586 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv830014 | chr4:98220259-98419635 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1011217 | chr4:98254736-98341313 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv879641 | chr4:98317295-98506794 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv879642 | chr4:98317295-98569259 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv879643 | chr4:98317295-99065480 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 7 | esv1838974 | chr4:98330337-98371858 | ZNF genes & repeats Weak transcription Enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 8 | esv1835978 | chr4:98330337-98469951 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 9 | esv1833751 | chr4:98330337-98471647 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:98326200-98332800 | Weak transcription | Liver | Liver |
| 2 | chr4:98332400-98332800 | Enhancers | Ovary | ovary |
