Variant report

Variant	rs17026915
Chromosome Location	chr3:89458612-89458613
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13089713	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512909	1.00[ASW][hapmap]
rs1982096	1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs34406434	0.89[ASN][1000 genomes]
rs6780506	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1008018	chr3:89382031-90254063	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv536639	chr3:89382031-90254063	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1010932	chr3:89424428-90192503	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89436600-89461800	Weak transcription	Fetal Brain Female	brain
2	chr3:89454400-89459800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:89454600-89460200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:89454800-89458800	Weak transcription	Fetal Stomach	stomach
5	chr3:89454800-89460200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:89456400-89461200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:89456600-89459000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:89456600-89459200	Enhancers	Fetal Lung	lung
9	chr3:89457400-89460200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:89457600-89458800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:89457600-89460400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:89457800-89458800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:89457800-89459000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:89457800-89460400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:89458200-89461400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:89458400-89459000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:89458400-89459200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:89458600-89459200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr3:89458600-89468000	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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