Variant report

Variant	rs1512909
Chromosome Location	chr3:89336417-89336418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1040015	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11914680	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11914760	0.93[CEU][hapmap];1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs11916891	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.89[ASN][1000 genomes]
rs11918311	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11919574	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs11921042	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11928901	0.96[ASN][1000 genomes]
rs12486049	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs12487141	0.89[ASN][1000 genomes]
rs12490659	0.93[CEU][hapmap];0.89[ASN][1000 genomes]
rs12491480	0.96[ASN][1000 genomes]
rs12493527	0.96[ASN][1000 genomes]
rs12494615	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12495783	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12496609	0.89[ASN][1000 genomes]
rs12496791	1.00[ASN][1000 genomes]
rs13058761	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs13058886	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs13060198	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13071923	0.89[ASN][1000 genomes]
rs13074291	0.93[CEU][hapmap];1.00[GIH][hapmap]
rs13075931	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13084503	0.96[ASN][1000 genomes]
rs13089469	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13095092	0.89[ASN][1000 genomes]
rs13097212	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13097548	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13098003	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13101118	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap]
rs17026915	1.00[ASW][hapmap]
rs34406434	0.81[AFR][1000 genomes]
rs34493897	0.89[ASN][1000 genomes]
rs34855223	1.00[ASN][1000 genomes]
rs34893903	0.96[ASN][1000 genomes]
rs34992749	0.89[ASN][1000 genomes]
rs35053334	0.89[ASN][1000 genomes]
rs35156943	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35445148	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.89[ASN][1000 genomes]
rs35971332	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4132274	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs56408441	0.89[ASN][1000 genomes]
rs56938121	0.89[ASN][1000 genomes]
rs59668913	0.89[ASN][1000 genomes]
rs71322851	0.96[ASN][1000 genomes]
rs71322854	0.96[ASN][1000 genomes]
rs71322855	0.96[ASN][1000 genomes]
rs71322856	0.96[ASN][1000 genomes]
rs71322857	0.89[ASN][1000 genomes]
rs71322858	0.89[ASN][1000 genomes]
rs7430987	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7432443	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7631932	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7635321	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7637578	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs7638207	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7642606	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv590921	chr3:89294149-89392778	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590922	chr3:89314862-89417064	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590923	chr3:89336417-89417171	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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