Variant report

Variant	rs17027257
Chromosome Location	chr2:86653699-86653700
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:86652314..86654591-chr2:86664666..86667245,2	MCF-7	breast:
2	chr2:86653403..86655819-chr2:86666546..86668232,2	K562	blood:
3	chr2:86645197..86646903-chr2:86653320..86654831,2	MCF-7	breast:
4	chr2:86650968..86653763-chr2:86667116..86670538,3	MCF-7	breast:
5	chr2:86647827..86650368-chr2:86653395..86655786,3	K562	blood:
6	chr2:86651786..86653739-chr2:86656746..86658439,2	K562	blood:
7	chr2:86651972..86654553-chr2:86657409..86659896,2	MCF-7	breast:
8	chr2:86651643..86655603-chr2:86667304..86670625,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000115548	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1033287	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs10865482	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs11127035	1.00[ASN][1000 genomes]
rs11127036	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127037	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127038	1.00[ASN][1000 genomes]
rs11679490	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11682587	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs11691143	1.00[ASN][1000 genomes]
rs11889193	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11889395	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11890686	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11894243	1.00[ASN][1000 genomes]
rs11894251	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs11894282	1.00[ASN][1000 genomes]
rs11899520	1.00[ASN][1000 genomes]
rs11899750	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1401314	0.98[ASN][1000 genomes]
rs1518809	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17027251	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3088046	0.88[EUR][1000 genomes]
rs56013658	1.00[ASN][1000 genomes]
rs56300462	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56724584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57344367	1.00[ASN][1000 genomes]
rs59305606	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6547686	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs66912486	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6726948	1.00[ASN][1000 genomes]
rs6735640	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6737677	0.85[ASN][1000 genomes]
rs7598470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86652400-86654200	Enhancers	HMEC	breast
2	chr2:86653200-86653800	Enhancers	NHEK	skin
3	chr2:86653200-86655000	Enhancers	Fetal Intestine Small	intestine
4	chr2:86653200-86655200	Enhancers	Fetal Intestine Large	intestine
5	chr2:86653400-86654000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:86653400-86654000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:86653400-86654400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr2:86653600-86654200	Enhancers	Duodenum Mucosa	Duodenum

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