Variant report

Variant	rs6737677
Chromosome Location	chr2:86640727-86640728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1033287	0.85[ASN][1000 genomes]
rs10865482	0.85[ASN][1000 genomes]
rs1105865	0.89[ASN][1000 genomes]
rs11127035	0.85[ASN][1000 genomes]
rs11127036	0.85[ASN][1000 genomes]
rs11127037	0.85[ASN][1000 genomes]
rs11127038	0.85[ASN][1000 genomes]
rs11679490	0.85[ASN][1000 genomes]
rs11691143	0.85[ASN][1000 genomes]
rs11889193	0.85[ASN][1000 genomes]
rs11889395	0.85[ASN][1000 genomes]
rs11890686	0.85[ASN][1000 genomes]
rs11894243	0.85[ASN][1000 genomes]
rs11894251	0.85[ASN][1000 genomes]
rs11894282	0.85[ASN][1000 genomes]
rs11899520	0.85[ASN][1000 genomes]
rs11899750	0.85[ASN][1000 genomes]
rs13387570	0.80[ASN][1000 genomes]
rs13425101	0.80[ASN][1000 genomes]
rs1401314	0.83[ASN][1000 genomes]
rs1518809	0.85[ASN][1000 genomes]
rs17027251	0.85[ASN][1000 genomes]
rs17027257	0.85[ASN][1000 genomes]
rs56013658	0.85[ASN][1000 genomes]
rs56724584	0.85[ASN][1000 genomes]
rs57344367	0.85[ASN][1000 genomes]
rs59305606	0.82[ASN][1000 genomes]
rs6547685	0.89[ASN][1000 genomes]
rs6547686	0.85[ASN][1000 genomes]
rs6706736	0.89[ASN][1000 genomes]
rs6723711	0.82[ASN][1000 genomes]
rs6726948	0.85[ASN][1000 genomes]
rs6735640	0.85[ASN][1000 genomes]
rs6743884	0.89[ASN][1000 genomes]
rs6751871	0.89[ASN][1000 genomes]
rs6755760	0.89[ASN][1000 genomes]
rs7586057	0.82[ASN][1000 genomes]
rs7598470	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86640400-86640800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:86640400-86640800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr2:86640400-86640800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr2:86640600-86640800	Enhancers	Primary B cells from cord blood	blood
5	chr2:86640600-86640800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:86640600-86640800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:86640600-86640800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:86640600-86641000	Enhancers	Primary hematopoietic stem cells	blood
9	chr2:86640600-86641000	Enhancers	Fetal Muscle Leg	muscle
10	chr2:86640600-86641200	Enhancers	Primary B cells from peripheral blood	blood
11	chr2:86640600-86641400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:86640600-86641400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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