Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:86623288..86624016-chr2:87035607..87036117,2	K562	blood:
2	chr2:86621403..86626884-chr2:86666803..86669988,9	MCF-7	breast:
3	chr2:86623305..86624164-chr2:86991958..86992660,2	MCF-7	breast:
4	chr2:86616684..86621383-chr2:86622282..86625754,5	K562	blood:
5	chr2:86421249..86424265-chr2:86622916..86627060,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10180036	0.82[CHB][hapmap]
rs10451666	1.00[CEU][hapmap]
rs1105862	0.81[YRI][hapmap]
rs1105863	0.84[YRI][hapmap]
rs1105864	0.82[YRI][hapmap]
rs1105865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12714186	0.82[CHB][hapmap]
rs13387570	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13425101	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1863062	1.00[CEU][hapmap]
rs2292887	0.82[CHB][hapmap]
rs3821015	1.00[CEU][hapmap]
rs56026070	0.87[ASN][1000 genomes]
rs56673455	0.87[ASN][1000 genomes]
rs6547685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6706736	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6723711	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6737677	0.89[ASN][1000 genomes]
rs6743884	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7586057	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7589635	0.87[ASN][1000 genomes]
rs870375	0.84[YRI][hapmap]
rs958561	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86621600-86624800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:86621600-86631000	Weak transcription	Gastric	stomach
3	chr2:86621800-86625000	Weak transcription	HSMMtube	muscle
4	chr2:86622000-86625200	Weak transcription	Fetal Intestine Small	intestine
5	chr2:86623600-86624600	Weak transcription	K562	blood
6	chr2:86623600-86626000	Weak transcription	HSMM	muscle
7	chr2:86623600-86627000	Weak transcription	Fetal Muscle Leg	muscle
8	chr2:86623800-86624600	Weak transcription	Left Ventricle	heart
9	chr2:86623800-86626200	Weak transcription	Aorta	Aorta
10	chr2:86623800-86626400	Weak transcription	Psoas Muscle	Psoas

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