Variant report

Variant	rs17027287
Chromosome Location	chr2:86756090-86756091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86752276..86754731-chr2:86755226..86757056,2	MCF-7	breast:
2	chr2:86755933..86757641-chr2:86759393..86762137,2	K562	blood:
3	chr2:86754212..86756941-chr2:86758517..86760046,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56249372	1.00[AMR][1000 genomes]
rs58376522	1.00[AMR][1000 genomes]
rs58487331	1.00[AMR][1000 genomes]
rs72928459	1.00[AMR][1000 genomes]
rs73945296	1.00[AMR][1000 genomes]
rs73946220	1.00[AMR][1000 genomes]
rs73949507	1.00[AMR][1000 genomes]
rs73949509	1.00[AMR][1000 genomes]
rs73949510	1.00[AMR][1000 genomes]
rs73949511	1.00[AMR][1000 genomes]
rs73949513	1.00[AMR][1000 genomes]
rs7557127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86679800-86757000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:86733000-86759400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:86733400-86758600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:86734000-86784800	Weak transcription	Osteobl	bone
5	chr2:86736400-86770600	Weak transcription	Brain Angular Gyrus	brain
6	chr2:86737000-86761200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:86737000-86772800	Weak transcription	Pancreas	Pancrea
8	chr2:86737400-86756800	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:86737400-86757400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr2:86737400-86788400	Weak transcription	Brain Hippocampus Middle	brain
11	chr2:86737600-86768400	Weak transcription	Ovary	ovary
12	chr2:86737800-86756400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr2:86737800-86779600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:86738200-86756200	Weak transcription	Brain Substantia Nigra	brain
15	chr2:86738200-86772400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr2:86738200-86772600	Weak transcription	Right Ventricle	heart
17	chr2:86738400-86759000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr2:86741400-86768400	Weak transcription	Psoas Muscle	Psoas
19	chr2:86746000-86768000	Weak transcription	Fetal Heart	heart
20	chr2:86748000-86756400	Weak transcription	Fetal Lung	lung
21	chr2:86748000-86757000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr2:86748000-86758000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr2:86748000-86758000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr2:86748000-86758600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr2:86748000-86760600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:86748000-86770600	Weak transcription	Gastric	stomach
27	chr2:86748200-86759000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr2:86749200-86756600	Strong transcription	Primary B cells from cord blood	blood
29	chr2:86749400-86757000	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr2:86749400-86772600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr2:86749400-86775000	Weak transcription	NH-A	brain
32	chr2:86749600-86757800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr2:86750000-86772400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr2:86750400-86773600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr2:86751200-86756600	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr2:86751400-86756600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr2:86751600-86757000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr2:86751800-86756400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr2:86752400-86756800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr2:86752600-86756400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr2:86752600-86756400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr2:86752600-86756600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr2:86752600-86756600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr2:86752600-86756600	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr2:86752800-86756400	Strong transcription	Primary B cells from peripheral blood	blood
46	chr2:86752800-86756600	Strong transcription	Liver	Liver
47	chr2:86752800-86756800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr2:86753000-86756400	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr2:86753000-86756400	Strong transcription	Fetal Muscle Leg	muscle
50	chr2:86753000-86756400	Strong transcription	Dnd41	blood

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