Variant report
| Variant | rs73945296 |
|---|---|
| Chromosome Location | chr2:86650065-86650066 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:86650009..86651660-chr2:86747619..86749348,2 | K562 | blood: | |
| 2 | chr2:86650055..86652516-chr2:86849553..86851296,2 | K562 | blood: | |
| 3 | chr2:86647827..86650368-chr2:86653395..86655786,3 | K562 | blood: | |
| 4 | chr2:86649265..86650840-chr2:86660376..86662543,2 | MCF-7 | breast: | |
| 5 | chr2:86644439..86647109-chr2:86647615..86650697,3 | MCF-7 | breast: | |
| 6 | chr2:86639068..86641413-chr2:86649542..86651582,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000249884 | Chromatin interaction |
| ENSG00000239305 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs17027287 | 1.00[AMR][1000 genomes] |
| rs56249372 | 1.00[AMR][1000 genomes] |
| rs58376522 | 1.00[AMR][1000 genomes] |
| rs58487331 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72928459 | 1.00[AMR][1000 genomes] |
| rs73946220 | 1.00[AMR][1000 genomes] |
| rs73949507 | 1.00[AMR][1000 genomes] |
| rs73949509 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73949510 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73949511 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73949513 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7557127 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3412938 | chr2:86370969-86867936 | Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 77 gene(s) | inside rSNPs | diseases |
| 2 | nsv532724 | chr2:86622295-87086407 | Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
