Variant report

Variant	rs17027541
Chromosome Location	chr4:152230543-152230544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10005764	1.00[EUR][1000 genomes]
rs10016856	1.00[EUR][1000 genomes]
rs10028324	1.00[EUR][1000 genomes]
rs11099784	1.00[EUR][1000 genomes]
rs17027575	1.00[EUR][1000 genomes]
rs2034062	1.00[EUR][1000 genomes]
rs2034063	1.00[EUR][1000 genomes]
rs28399915	1.00[EUR][1000 genomes]
rs28401367	1.00[EUR][1000 genomes]
rs28432996	1.00[EUR][1000 genomes]
rs28493533	1.00[EUR][1000 genomes]
rs28566074	1.00[EUR][1000 genomes]
rs28594255	1.00[EUR][1000 genomes]
rs28644282	1.00[EUR][1000 genomes]
rs28658039	1.00[EUR][1000 genomes]
rs28791569	1.00[EUR][1000 genomes]
rs28836884	1.00[EUR][1000 genomes]
rs56681758	1.00[EUR][1000 genomes]
rs58001315	1.00[EUR][1000 genomes]
rs58602547	1.00[EUR][1000 genomes]
rs59043107	1.00[EUR][1000 genomes]
rs60001201	1.00[EUR][1000 genomes]
rs60162090	1.00[EUR][1000 genomes]
rs60661732	1.00[EUR][1000 genomes]
rs6855493	1.00[EUR][1000 genomes]
rs6856037	1.00[EUR][1000 genomes]
rs72967593	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73859998	1.00[EUR][1000 genomes]
rs73860000	1.00[EUR][1000 genomes]
rs73861187	1.00[EUR][1000 genomes]
rs73861286	1.00[EUR][1000 genomes]
rs73861817	1.00[EUR][1000 genomes]
rs73861820	1.00[EUR][1000 genomes]
rs73861828	1.00[EUR][1000 genomes]
rs73861829	1.00[EUR][1000 genomes]
rs73861840	1.00[EUR][1000 genomes]
rs73861849	1.00[EUR][1000 genomes]
rs73861862	1.00[EUR][1000 genomes]
rs7659047	1.00[EUR][1000 genomes]
rs9917939	1.00[EUR][1000 genomes]
rs9918061	1.00[EUR][1000 genomes]
rs9968310	1.00[EUR][1000 genomes]
rs9991362	1.00[EUR][1000 genomes]
rs9997354	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880262	chr4:151712054-152519899	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv881526	chr4:151968295-152489087	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1025192	chr4:152202627-152498890	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537307	chr4:152202627-152498890	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152197800-152242400	Weak transcription	Aorta	Aorta
2	chr4:152198800-152242800	Weak transcription	Fetal Lung	lung
3	chr4:152203600-152243000	Weak transcription	Esophagus	oesophagus
4	chr4:152213000-152234800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:152213400-152235800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:152217000-152233600	Weak transcription	Right Atrium	heart
7	chr4:152217000-152235800	Weak transcription	Lung	lung
8	chr4:152218600-152232600	Weak transcription	HUVEC	blood vessel
9	chr4:152218600-152236000	Weak transcription	A549	lung
10	chr4:152218800-152242200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:152219200-152234800	Weak transcription	Right Ventricle	heart
12	chr4:152219200-152235800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:152220000-152234800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:152223600-152233600	Weak transcription	Small Intestine	intestine
15	chr4:152223600-152236000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:152223800-152234800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:152225800-152234800	Weak transcription	Brain Anterior Caudate	brain
18	chr4:152225800-152236000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:152226000-152233600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr4:152226000-152234800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:152226000-152234800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr4:152226000-152235200	Weak transcription	Ovary	ovary
23	chr4:152226000-152235400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr4:152226200-152234200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:152226200-152234800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:152226200-152234800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr4:152226200-152234800	Weak transcription	Liver	Liver
28	chr4:152226200-152234800	Weak transcription	Colon Smooth Muscle	Colon
29	chr4:152226200-152235800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr4:152226400-152233400	Weak transcription	Fetal Heart	heart
31	chr4:152226400-152234200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr4:152226600-152234200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:152226600-152244400	Weak transcription	Adipose Nuclei	Adipose
34	chr4:152227400-152234800	Weak transcription	Brain Hippocampus Middle	brain
35	chr4:152228000-152231800	Strong transcription	HepG2	liver
36	chr4:152228600-152231200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:152228600-152231400	Strong transcription	Fetal Intestine Small	intestine
38	chr4:152228600-152231600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr4:152228800-152232000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr4:152228800-152232400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr4:152228800-152235800	Weak transcription	Gastric	stomach
42	chr4:152228800-152243200	Weak transcription	Fetal Stomach	stomach
43	chr4:152229000-152232800	Weak transcription	Fetal Intestine Large	intestine
44	chr4:152229000-152234200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr4:152229000-152234800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr4:152229000-152234800	Weak transcription	Stomach Smooth Muscle	stomach
47	chr4:152229000-152236000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr4:152229000-152236000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr4:152229000-152242000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr4:152229800-152231000	Weak transcription	Left Ventricle	heart

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